KEGG   PATHWAY: bth00020
Entry
bth00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bacteroides thetaiotaomicron VPI-5482
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bth00020  Citrate cycle (TCA cycle)
bth00020

Module
bth_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bth00020]
bth_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bth00020]
bth_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bth00020]
bth_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bth00020]
bth_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bth00020]
Other DBs
GO: 0006099
Organism
Bacteroides thetaiotaomicron VPI-5482 [GN:bth]
Gene
BT_2070  citrate synthase [KO:K01647] [EC:2.3.3.1]
BT_2072  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BT_2071  isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
BT_0311  lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
BT_3186  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BT_0309  Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BT_2836  2-oxoglutarate synthase subunit korA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BT_0331  ketoisovalerate oxidoreductase subunit vorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BT_2837  2-oxoglutarate synthase subunit korB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BT_0330  ketoisovalerate oxidoreductase subunit vorA [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BT_0329  ketoisovalerate oxidoreductase subunit vorA [KO:K00177] [EC:1.2.7.3]
BT_0333  4Fe-4S ferredoxin, iron-sulfur binding protein [KO:K00176] [EC:1.2.7.3]
BT_0787  succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
BT_0788  succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
BT_3054  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BT_3055  succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BT_3053  putative cytochrome B subunit [KO:K00241]
BT_2256  fumarate hydratase class I, anaerobic [KO:K01676] [EC:4.2.1.2]
BT_2510  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BT_3911  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BT_1697  pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
BT_1196  pyruvate carboxylase subunit B) [KO:K01960] [EC:6.4.1.1]
BT_2790  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BT_1747  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bth00010  Glycolysis / Gluconeogenesis
bth00053  Ascorbate and aldarate metabolism
bth00061  Fatty acid biosynthesis
bth00190  Oxidative phosphorylation
bth00220  Arginine biosynthesis
bth00250  Alanine, aspartate and glutamate metabolism
bth00280  Valine, leucine and isoleucine degradation
bth00350  Tyrosine metabolism
bth00470  D-Amino acid metabolism
bth00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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