KEGG   PATHWAY: calk00020
Entry
calk00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Candidatus Contubernalis alkalaceticus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
calk00020  Citrate cycle (TCA cycle)
calk00020

Module
calk_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:calk00020]
calk_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:calk00020]
calk_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:calk00020]
Other DBs
GO: 0006099
Organism
Candidatus Contubernalis alkalaceticus [GN:calk]
Gene
HUE98_05640  citrate/2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
HUE98_09025  citrate/2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
HUE98_07280  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
HUE98_05585  isocitrate/isopropylmalate dehydrogenase family protein [KO:K00030] [EC:1.1.1.41]
HUE98_05475  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HUE98_00305  ferredoxin oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HUE98_15390  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HUE98_00310  2-oxoglutarate synthase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HUE98_15385  2-oxoacid ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HUE98_05525  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
HUE98_05530  Fe-S-containing hydro-lyase [KO:K01678] [EC:4.2.1.2]
HUE98_10170  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
HUE98_04300  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
HUE98_05040  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
HUE98_02355  pyruvate synthase subunit beta [KO:K00170] [EC:1.2.7.1]
HUE98_04295  pyruvate synthase subunit beta [KO:K00170] [EC:1.2.7.1]
HUE98_05045  pyruvate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
HUE98_04305  pyruvate ferredoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
HUE98_05030  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
HUE98_02340  2-oxoacid:acceptor oxidoreductase family protein [KO:K00189] [EC:1.2.7.7 1.2.7.1]
HUE98_02345  4Fe-4S binding protein [KO:K00171] [EC:1.2.7.1]
HUE98_05035  4Fe-4S binding protein [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
calk00010  Glycolysis / Gluconeogenesis
calk00053  Ascorbate and aldarate metabolism
calk00061  Fatty acid biosynthesis
calk00190  Oxidative phosphorylation
calk00220  Arginine biosynthesis
calk00250  Alanine, aspartate and glutamate metabolism
calk00280  Valine, leucine and isoleucine degradation
calk00350  Tyrosine metabolism
calk00470  D-Amino acid metabolism
calk00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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