KEGG   PATHWAY: cam03008
Entry
cam03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Cicer arietinum (chickpea)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
cam03008  Ribosome biogenesis in eukaryotes
cam03008

Organism
Cicer arietinum (chickpea) [GN:cam]
Gene
101492942  casein kinase II subunit beta-like [KO:K03115]
101501953  casein kinase II subunit beta-like [KO:K03115]
101508276  casein kinase II subunit alpha, chloroplastic [KO:K03097] [EC:2.7.11.1]
101511815  casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
101496829  casein kinase II subunit alpha-like [KO:K03097] [EC:2.7.11.1]
101501766  nucleolar protein 6-like [KO:K14544]
101502091  nucleolar protein 6-like [KO:K14544]
101497949  uncharacterized protein DDB_G0283697-like [KO:K14545]
101510449  transcriptional regulator ATRX homolog [KO:K14545]
101502685  WD repeat-containing protein 43 [KO:K14546]
101513210  WD repeat-containing protein 43 [KO:K14546]
101510380  cirhin [KO:K14548]
101514408  cirhin-like [KO:K14548]
101507389  protein SLOW WALKER 1 [KO:K14549]
101510150  uncharacterized protein At3g06530 [KO:K14550]
101492545  uncharacterized protein At3g06530-like [KO:K14550]
101499731  WD repeat-containing protein 75 [KO:K14552]
101499189  U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
101513454  U3 small nucleolar RNA-associated protein 21 homolog [KO:K14554]
101495596  transducin beta-like protein 3 [KO:K14555]
101509269  WDR3; WD repeat-containing protein 3 [KO:K14556]
101497116  U3 small nucleolar RNA-associated protein 6 homolog [KO:K14557]
101504958  periodic tryptophan protein 2 homolog [KO:K14558]
101497992  U3 small nucleolar ribonucleoprotein protein MPP10 [KO:K14559]
101511568  U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
101512085  U3 small nucleolar ribonucleoprotein protein IMP4 [KO:K14561]
101508977  mediator of RNA polymerase II transcription subunit 36a-like [KO:K14563] [EC:2.1.1.-]
101490154  NOP56; nucleolar protein 56 [KO:K14564]
101515595  probable nucleolar protein 5-1 [KO:K14565]
101500272  NHP2-like protein 1 [KO:K12845]
101514303  NHP2-like protein 1 [KO:K12845]
101513077  H/ACA ribonucleoprotein complex subunit 4 [KO:K11131] [EC:5.4.99.-]
101489670  H/ACA ribonucleoprotein complex subunit 2-like protein [KO:K11129]
101500694  H/ACA ribonucleoprotein complex subunit 2-like protein [KO:K11129]
101507162  putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [KO:K11128]
101492406  H/ACA ribonucleoprotein complex subunit 3-like protein [KO:K11130]
101506570  H/ACA ribonucleoprotein complex subunit 3-like protein [KO:K11130]
101504471  rRNA-processing protein FCF1 homolog [KO:K14566]
101488725  rRNA-processing protein FCF1 homolog [KO:K14566]
101496628  rRNA-processing protein FCF1 homolog [KO:K14566]
101491846  uncharacterized protein C57A7.06 [KO:K14567]
101499888  ribosomal RNA small subunit methyltransferase NEP1-like [KO:K14568] [EC:2.1.1.260]
101504099  BMS1; ribosome biogenesis protein BMS1 homolog [KO:K14569]
101512656  UPF0202 protein At1g10490 [KO:K14521] [EC:2.3.1.-]
101494166  probable RNA 3'-terminal phosphate cyclase-like protein [KO:K11108]
101490270  uncharacterized LOC101490270 [KO:K01164] [EC:3.1.26.5]
101504542  ribonuclease P protein subunit p29-like [KO:K03538] [EC:3.1.26.5]
101514096  ribonuclease P protein subunit p29-like [KO:K03538] [EC:3.1.26.5]
101508929  probable ribonuclease P/MRP protein subunit POP5 [KO:K03537] [EC:3.1.26.5]
101494210  uncharacterized LOC101494210 [KO:K03539] [EC:3.1.26.5]
101508355  small RNA degrading nuclease 1-like [KO:K14570] [EC:3.1.-.-]
101497200  small RNA degrading nuclease 5 [KO:K14570] [EC:3.1.-.-]
101490129  oligoribonuclease [KO:K13288] [EC:3.1.-.-]
101510269  5'-3' exoribonuclease 3 [KO:K12619] [EC:3.1.13.-]
101501859  nucleolar GTP-binding protein 1-like [KO:K06943]
101491664  nucleolar GTP-binding protein 1 [KO:K06943]
105852355  nuclear/nucleolar GTPase 2-like [KO:K14537]
101490797  guanine nucleotide-binding protein-like NSN1 [KO:K14538]
101492430  cell division control protein 48 homolog C-like [KO:K14571]
101489003  cell division control protein 48 homolog C-like [KO:K14571]
101494011  midasin [KO:K14572]
101501868  RNA-binding protein 28 [KO:K14573]
101515029  RNA-binding protein NOB1 [KO:K11883]
101513547  GTP-binding nuclear protein Ran1A-like [KO:K07936]
105851162  GTP-binding nuclear protein Ran1A [KO:K07936]
101515022  GTP-binding nuclear protein Ran1A [KO:K07936]
101488432  GTP-binding nuclear protein Ran-3-like [KO:K07936]
101492671  protein EXPORTIN 1A [KO:K14290]
101504227  protein EXPORTIN 1A-like [KO:K14290]
101494816  60S ribosomal export protein NMD3 [KO:K07562]
101488832  60S ribosomal export protein NMD3-like [KO:K07562]
101500735  eukaryotic translation initiation factor 6-2 [KO:K03264]
101511297  eukaryotic translation initiation factor 6-2-like [KO:K03264]
101507882  ribosome maturation protein SBDS [KO:K14574]
101498272  elongation factor Tu GTP-binding domain-containing protein 1 [KO:K14536] [EC:3.6.5.-]
101508690  GTPase LSG1-1-like [KO:K14539] [EC:3.6.1.-]
101494405  adenylate kinase isoenzyme 6 homolog [KO:K18532] [EC:2.7.4.3]
101509100  adenylate kinase isoenzyme 6 homolog [KO:K18532] [EC:2.7.4.3]
101502906  serine/threonine-protein kinase rio1-like [KO:K07178] [EC:2.7.11.1]
101510995  serine/threonine-protein kinase RIO1-like [KO:K07178] [EC:2.7.11.1]
101493654  serine/threonine-protein kinase rio2 [KO:K07179] [EC:2.7.11.1]
6797555  CiarC_r004; 5S ribosomal RNA [KO:K01981]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
cam03010  Ribosome
KO pathway
ko03008   
LinkDB

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