KEGG   PATHWAY: cama00030
Entry
cama00030                   Pathway                                
Name
Pentose phosphate pathway - Citrobacter amalonaticus Y19
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cama00030  Pentose phosphate pathway
cama00030

Module
cama_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:cama00030]
cama_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:cama00030]
cama_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:cama00030]
cama_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:cama00030]
cama_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:cama00030]
cama_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:cama00030]
cama_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:cama00030]
Other DBs
GO: 0006098
Organism
Citrobacter amalonaticus Y19 [GN:cama]
Gene
F384_22220  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
F384_00125  glucose-6-phosphate isomerase [KO:K06859] [EC:5.3.1.9]
F384_00130  glucose-6-phosphate isomerase [KO:K06859] [EC:5.3.1.9]
F384_08945  glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
F384_03495  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
F384_16655  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
F384_10930  6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
F384_16555  epimerase [KO:K01783] [EC:5.1.3.1]
F384_18400  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
F384_12270  transketolase [KO:K00615] [EC:2.2.1.1]
F384_12275  carbohydrate degradation protein [KO:K00615] [EC:2.2.1.1]
F384_13615  transketolase [KO:K00615] [EC:2.2.1.1]
F384_02555  transketolase [KO:K00615] [EC:2.2.1.1]
F384_02560  transketolase [KO:K00615] [EC:2.2.1.1]
F384_09925  transketolase [KO:K00615] [EC:2.2.1.1]
F384_25935  transketolase [KO:K00615] [EC:2.2.1.1]
F384_00040  transaldolase [KO:K00616] [EC:2.2.1.2]
F384_13610  transaldolase [KO:K00616] [EC:2.2.1.2]
F384_09930  transaldolase [KO:K00616] [EC:2.2.1.2]
F384_16045  ribose 5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
F384_08635  ribose 5-phosphate isomerase [KO:K01808] [EC:5.3.1.6]
F384_08450  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
F384_09065  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
F384_04850  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
F384_09935  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
F384_16100  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
F384_20415  ribokinase [KO:K00852] [EC:2.7.1.15]
F384_04845  carbohydrate kinase [KO:K00852] [EC:2.7.1.15]
F384_20055  ribokinase [KO:K00852] [EC:2.7.1.15]
F384_16090  phosphopentomutase [KO:K01839] [EC:5.4.2.7]
F384_03050  phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
F384_22830  ribose-phosphate pyrophosphokinase [KO:K05774] [EC:2.7.4.23]
F384_08340  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
F384_08940  phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
F384_04935  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
F384_08935  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
F384_19940  4-hydroxy-2-ketovalerate aldolase [KO:K17463] [EC:4.1.2.14]
F384_00705  glucose dehydrogenase [KO:K00117] [EC:1.1.5.2]
F384_19280  bifunctional glyoxylate/hydroxypyruvate reductase B [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
F384_18675  gntK; gluconate kinase [KO:K00851] [EC:2.7.1.12]
F384_16975  idnK; gluconate kinase [KO:K00851] [EC:2.7.1.12]
F384_19110  ketodeoxygluconokinase [KO:K00874] [EC:2.7.1.45]
F384_19270  2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
F384_19965  PTS fructose transporter subunit IIA [KO:K17464] [EC:2.7.1.203]
F384_19960  PTS sugar transporter [KO:K17465] [EC:2.7.1.203]
F384_19955  PTS sorbose transporter subunit IIC [KO:K17466]
F384_19950  PTS fructose transporter subunit IID [KO:K17467]
F384_00135  PTS fructose transporter subunit IID [KO:K17467]
F384_19945  selenocysteine synthase [KO:K17468] [EC:4.3.1.29]
F384_11230  fructose-bisphosphate aldolase [KO:K11645] [EC:4.1.2.13]
F384_01710  fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
F384_21140  iron ABC transporter substrate-binding protein [KO:K01624] [EC:4.1.2.13]
F384_25980  fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
F384_24350  fructose 1,6-bisphosphatase [KO:K03841] [EC:3.1.3.11]
F384_21555  fructose 1,6-bisphosphatase [KO:K02446] [EC:3.1.3.11]
F384_25955  fructose 1,6-bisphosphatase [KO:K02446] [EC:3.1.3.11]
F384_21490  6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
F384_21125  permease [KO:K00850] [EC:2.7.1.11]
F384_06030  6-phosphofructokinase [KO:K16370] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
cama00010  Glycolysis / Gluconeogenesis
cama00040  Pentose and glucuronate interconversions
cama00052  Galactose metabolism
cama00230  Purine metabolism
cama00240  Pyrimidine metabolism
cama00340  Histidine metabolism
cama00630  Glyoxylate and dicarboxylate metabolism
cama00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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