KEGG   PATHWAY: cbet00020
Entry
cbet00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Cercospora beticola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cbet00020  Citrate cycle (TCA cycle)
cbet00020

Module
cbet_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cbet00020]
cbet_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cbet00020]
cbet_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cbet00020]
cbet_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cbet00020]
cbet_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cbet00020]
Other DBs
GO: 0006099
Organism
Cercospora beticola [GN:cbet]
Gene
CB0940_01149  2-methylcitrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
CB0940_02618  Citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
CB0940_07083  putative ATP-citrate synthase subunit 2 [KO:K01648] [EC:2.3.3.8]
CB0940_07084  putative ATP-citrate synthase subunit 1 [KO:K01648] [EC:2.3.3.8]
CB0940_05402  Aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
CB0940_10195  putative aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
CB0940_11615  Isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
CB0940_11218  Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
CB0940_03185  Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial [KO:K00030] [EC:1.1.1.41]
CB0940_08451  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
CB0940_05360  Dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CB0940_10101  Dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
CB0940_09986  putative succinyl-CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
CB0940_00720  putative succinyl-CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
CB0940_06106  putative succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
CB0940_04097  putative succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
CB0940_01727  putative succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
CB0940_11189  Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
CB0940_03910  hypothetical protein [KO:K00236]
CB0940_11854  Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
CB0940_00241  Fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
CB0940_09126  Malate dehydrogenase, cytoplasmic [KO:K00026] [EC:1.1.1.37]
CB0940_03570  Malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
CB0940_01758  Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
CB0940_08574  Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
CB0940_06149  Pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
CB0940_03295  Dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cbet00010  Glycolysis / Gluconeogenesis
cbet00053  Ascorbate and aldarate metabolism
cbet00061  Fatty acid biosynthesis
cbet00062  Fatty acid elongation
cbet00071  Fatty acid degradation
cbet00190  Oxidative phosphorylation
cbet00220  Arginine biosynthesis
cbet00250  Alanine, aspartate and glutamate metabolism
cbet00280  Valine, leucine and isoleucine degradation
cbet00350  Tyrosine metabolism
cbet00470  D-Amino acid metabolism
cbet00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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