KEGG   PATHWAY: cbol00020
Entry
cbol00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Enterocloster bolteae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cbol00020  Citrate cycle (TCA cycle)
cbol00020

Module
cbol_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cbol00020]
cbol_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cbol00020]
Other DBs
GO: 0006099
Organism
Enterocloster bolteae [GN:cbol]
Gene
CGC65_17440  citrate synthase [KO:K01659] [EC:2.3.3.5]
CGC65_15380  citrate/2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
CGC65_30340  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
CGC65_10745  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CGC65_25375  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CGC65_24080  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CGC65_29370  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CGC65_05135  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CGC65_18865  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CGC65_22825  2-oxoglutarate synthase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CGC65_05625  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CGC65_18860  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CGC65_22820  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CGC65_05620  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CGC65_18855  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
CGC65_22815  2-oxoacid:acceptor oxidoreductase [KO:K00177] [EC:1.2.7.3]
CGC65_05615  keto:oxoacid ferredoxin oxidoreductase [KO:K00177] [EC:1.2.7.3]
CGC65_18870  2-oxoacid:acceptor oxidoreductase [KO:K00176] [EC:1.2.7.3]
CGC65_22830  ferredoxin family protein [KO:K00176] [EC:1.2.7.3]
CGC65_05630  oxidoreductase [KO:K00176] [EC:1.2.7.3]
CGC65_00040  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
CGC65_00045  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
CGC65_12100  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CGC65_05120  hypothetical protein [KO:K00627] [EC:2.3.1.12]
CGC65_18960  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
CGC65_18955  2-ketoisovalerate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
CGC65_18970  pyruvate ferredoxin oxidoreductase [KO:K00172] [EC:1.2.7.1]
CGC65_18965  2-oxoacid:acceptor oxidoreductase [KO:K00171] [EC:1.2.7.1]
CGC65_17360  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cbol00010  Glycolysis / Gluconeogenesis
cbol00053  Ascorbate and aldarate metabolism
cbol00061  Fatty acid biosynthesis
cbol00071  Fatty acid degradation
cbol00190  Oxidative phosphorylation
cbol00220  Arginine biosynthesis
cbol00250  Alanine, aspartate and glutamate metabolism
cbol00280  Valine, leucine and isoleucine degradation
cbol00350  Tyrosine metabolism
cbol00470  D-Amino acid metabolism
cbol00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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