KEGG   PATHWAY: cby00240
Entry
cby00240                    Pathway                                
Name
Pyrimidine metabolism - Clostridium botulinum A2
Class
Metabolism; Nucleotide metabolism
Pathway map
cby00240  Pyrimidine metabolism
cby00240

Module
cby_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:cby00240]
cby_M00051  De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:cby00240]
Other DBs
GO: 0006220 0006213
Organism
Clostridium botulinum A2 [GN:cby]
Gene
CLM_2001  carB; carbamoyl-phosphate synthase, large subunit [KO:K01955] [EC:6.3.5.5]
CLM_3089  ATP domain protein [KO:K01955] [EC:6.3.5.5]
CLM_2002  carA; carbamoyl-phosphate synthase, small subunit [KO:K01956] [EC:6.3.5.5]
CLM_3653  pyrB; aspartate carbamoyltransferase [KO:K00609] [EC:2.1.3.2]
CLM_3652  pyrI; aspartate carbamoyltransferase, regulatory subunit [KO:K00610]
CLM_3651  pyrC; dihydroorotase, multifunctional complex type [KO:K01465] [EC:3.5.2.3]
CLM_3648  pyrD; dihydroorotate oxidase [KO:K17828] [EC:1.3.1.14]
CLM_3649  pyrK; dihydroorotate dehydrogenase, electron transfer subunit [KO:K02823]
CLM_3647  pyrE; orotate phosphoribosyltransferase [KO:K00762] [EC:2.4.2.10]
CLM_3650  pyrF; orotidine 5'-phosphate decarboxylase [KO:K01591] [EC:4.1.1.23]
CLM_2726  pyrH; UMP kinase [KO:K09903] [EC:2.7.4.22]
CLM_3400  maf; septum formation protein Maf [KO:K06287] [EC:3.6.1.-]
CLM_0175  pyrG; CTP synthase [KO:K01937] [EC:6.3.4.2]
CLM_1965  cmk; cytidylate kinase [KO:K00945] [EC:2.7.4.25]
CLM_2861  udk; uridine kinase [KO:K00876] [EC:2.7.1.48]
CLM_0245  putative threonyl-tRNA synthetase/uridine kinase [KO:K00876] [EC:2.7.1.48]
CLM_0283  surE; acid phosphatase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
CLM_3593  conserved hypothetical protein [KO:K09913] [EC:2.4.2.1 2.4.2.2]
CLM_0188  upp; uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9]
CLM_3184  pyrR; pyrimidine operon regulatory protein/uracil phosphoribosyltransferase [KO:K02825] [EC:2.4.2.9]
CLM_1715  pyrR; pyrimidine operon regulatory protein/uracil phosphoribosyltransferase [KO:K02825] [EC:2.4.2.9]
CLM_1319  kinase, PfkB family [KO:K16328] [EC:2.7.1.83]
CLM_1320  indigoidine synthase A family protein [KO:K16329] [EC:4.2.1.70]
CLM_2024  pdp; pyrimidine-nucleoside phosphorylase [KO:K00756] [EC:2.4.2.2]
CLM_3341  cdd; cytidine deaminase [KO:K01489] [EC:3.5.4.5]
CLM_0305  cytidine/deoxycytidylate deaminase family protein [KO:K01489] [EC:3.5.4.5]
CLM_3820  cytidine/deoxycytidylate deaminase family protein [KO:K01489] [EC:3.5.4.5]
CLM_0137  nrdD; anaerobic ribonucleoside-triphosphate reductase [KO:K21636] [EC:1.1.98.6]
CLM_3178  nrdA; ribonucleoside-diphosphate reductase, alpha subunit [KO:K00525] [EC:1.17.4.1]
CLM_3177  nrdB; ribonucleoside-diphosphate reductase, beta subunit [KO:K00526] [EC:1.17.4.1]
CLM_0190  cytidine/deoxycytidylate deaminase family protein [KO:K01493] [EC:3.5.4.12]
CLM_0097  putative thymidylate kinase [KO:K00943] [EC:2.7.4.9]
CLM_1391  dut; deoxyuridine 5'-triphosphate nucleotidohydrolase [KO:K01520] [EC:3.6.1.23]
CLM_0179  tdk; thymidine kinase [KO:K00857] [EC:2.7.1.21]
CLM_0918  thyA; thymidylate synthase [KO:K00560] [EC:2.1.1.45]
CLM_3970  thyX; thymidylate synthase, flavin-dependent [KO:K03465] [EC:2.1.1.148]
CLM_3183  pyridine nucleotide-disulphide oxidoreductase family protein [KO:K17722] [EC:1.3.1.1]
CLM_3182  dihydroorotate dehydrogenase family protein [KO:K17723] [EC:1.3.1.1]
CLM_3282  hydA; dihydropyrimidinase [KO:K01464] [EC:3.5.2.2]
CLM_0737  atcC; N-carbamyl-L-cysteine amidohydrolase [KO:K06016] [EC:3.5.1.6 3.5.1.87]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
cby00030  Pentose phosphate pathway
cby00220  Arginine biosynthesis
cby00250  Alanine, aspartate and glutamate metabolism
cby00280  Valine, leucine and isoleucine degradation
cby00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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