KEGG   PATHWAY: ccac00020
Entry
ccac00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Cutaneotrichosporon cavernicola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ccac00020  Citrate cycle (TCA cycle)
ccac00020

Module
ccac_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ccac00020]
ccac_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ccac00020]
ccac_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ccac00020]
ccac_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ccac00020]
ccac_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ccac00020]
Other DBs
GO: 0006099
Organism
Cutaneotrichosporon cavernicola [GN:ccac]
Gene
CcaHIS019_0407270  CIT1; uncharacterized protein [KO:K01647] [EC:2.3.3.1]
CcaHIS019_0406500  acl1; uncharacterized protein [KO:K01648] [EC:2.3.3.8]
CcaHIS019_0702010  ACO1; uncharacterized protein [KO:K01681] [EC:4.2.1.3]
CcaHIS019_0210370  IDP1; uncharacterized protein [KO:K00031] [EC:1.1.1.42]
CcaHIS019_0106080  IDH1; uncharacterized protein [KO:K00030] [EC:1.1.1.41]
CcaHIS019_0202130  IDH2; uncharacterized protein [KO:K00030] [EC:1.1.1.41]
CcaHIS019_0508270  KGD1; uncharacterized protein [KO:K00164] [EC:1.2.4.2]
CcaHIS019_0507890  CcaverHIS019_0507890; uncharacterized protein [KO:K00658] [EC:2.3.1.61]
CcaHIS019_0205900  LPD1; uncharacterized protein [KO:K00382] [EC:1.8.1.4]
CcaHIS019_0102050  LSC1; uncharacterized protein [KO:K01899] [EC:6.2.1.4 6.2.1.5]
CcaHIS019_0205130  CcaverHIS019_0205130; uncharacterized protein [KO:K01899] [EC:6.2.1.4 6.2.1.5]
CcaHIS019_0109260  LSC2; uncharacterized protein [KO:K01900] [EC:6.2.1.4 6.2.1.5]
CcaHIS019_0206000  SDH1; uncharacterized protein [KO:K00234] [EC:1.3.5.1]
CcaHIS019_0201140  SDH2; uncharacterized protein [KO:K00235] [EC:1.3.5.1]
CcaHIS019_0406930  SDH3; uncharacterized protein [KO:K00236]
CcaHIS019_0508630  SDH4; uncharacterized protein [KO:K00237]
CcaHIS019_0306410  FUM1; uncharacterized protein [KO:K01679] [EC:4.2.1.2]
CcaHIS019_0701750  CcaverHIS019_0701750; uncharacterized protein [KO:K00026] [EC:1.1.1.37]
CcaHIS019_0110810  MDH1; uncharacterized protein [KO:K00026] [EC:1.1.1.37]
CcaHIS019_0502970  PYC1; uncharacterized protein [KO:K01958] [EC:6.4.1.1]
CcaHIS019_0305720  PCK1; uncharacterized protein [KO:K01610] [EC:4.1.1.49]
CcaHIS019_0109730  PDA1; uncharacterized protein [KO:K00161] [EC:1.2.4.1]
CcaHIS019_0201750  PDB1; uncharacterized protein [KO:K00162] [EC:1.2.4.1]
CcaHIS019_0301890  CcaverHIS019_0301890; uncharacterized protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ccac00010  Glycolysis / Gluconeogenesis
ccac00053  Ascorbate and aldarate metabolism
ccac00061  Fatty acid biosynthesis
ccac00062  Fatty acid elongation
ccac00071  Fatty acid degradation
ccac00190  Oxidative phosphorylation
ccac00220  Arginine biosynthesis
ccac00250  Alanine, aspartate and glutamate metabolism
ccac00280  Valine, leucine and isoleucine degradation
ccac00350  Tyrosine metabolism
ccac00470  D-Amino acid metabolism
ccac00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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