KEGG   PATHWAY: ccf00020
Entry
ccf00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Campylobacter coli RM1875
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ccf00020  Citrate cycle (TCA cycle)
ccf00020

Module
ccf_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ccf00020]
ccf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ccf00020]
ccf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ccf00020]
Other DBs
GO: 0006099
Organism
Campylobacter coli RM1875 [GN:ccf]
Gene
YSQ_09610  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
YSQ_05230  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
YSQ_07200  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
YSQ_07175  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
YSQ_07170  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
YSQ_07165  oorC; 2-oxoglutarate:acceptor oxidoreductase [KO:K00177] [EC:1.2.7.3]
YSQ_07180  oorD; 2-oxoglutarate:acceptor oxidoreductase [KO:K00176] [EC:1.2.7.3]
YSQ_07185  succinyl-CoA synthetase subsunit alpha [KO:K01902] [EC:6.2.1.5]
YSQ_07190  sucC; malate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
YSQ_07840  fumarate reductase [KO:K00233] [EC:1.3.5.1 7.1.1.12]
YSQ_07835  frdB; fumarate reductase [KO:K25995] [EC:1.3.5.1 7.1.1.12]
YSQ_07845  fumarate reductase [KO:K25996]
YSQ_02030  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
YSQ_07195  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
YSQ_07920  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
YSQ_03835  acetyl-CoA carboxylase subunit alpha [KO:K01959] [EC:6.4.1.1]
YSQ_04560  biotin attachment protein [KO:K01960] [EC:6.4.1.1]
YSQ_04565  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
YSQ_01530  Pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ccf00010  Glycolysis / Gluconeogenesis
ccf00061  Fatty acid biosynthesis
ccf00190  Oxidative phosphorylation
ccf00220  Arginine biosynthesis
ccf00250  Alanine, aspartate and glutamate metabolism
ccf00280  Valine, leucine and isoleucine degradation
ccf00350  Tyrosine metabolism
ccf00470  D-Amino acid metabolism
ccf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system