KEGG   PATHWAY: cdu00020
Entry
cdu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Candida dubliniensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cdu00020  Citrate cycle (TCA cycle)
cdu00020

Module
cdu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cdu00020]
cdu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cdu00020]
cdu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cdu00020]
cdu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cdu00020]
cdu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cdu00020]
Other DBs
GO: 0006099
Organism
Candida dubliniensis [GN:cdu]
Gene
CD36_28700  citrate synthase, mitochondrial precursor, putative [KO:K01647] [EC:2.3.3.1]
CD36_33840  aconitase, putative [KO:K01681] [EC:4.2.1.3]
CD36_27320  isocitrate dehydrogenase, putative [KO:K00031] [EC:1.1.1.42]
CD36_20310  isocitrate dehydrogenase [nadp], mitochondrial precursor, putative [KO:K00031] [EC:1.1.1.42]
CD36_17850  isocitrate dehydrogenase [nad] subunit 2, mitochondrial precursor, putative [KO:K00030] [EC:1.1.1.41]
CD36_09070  NAD+-specific isocitric dehydrogenase, putative [KO:K00030] [EC:1.1.1.41]
CD36_80800  2-oxoglutarate dehydrogenase E1 component, mitochondrial precursor, putative [KO:K00164] [EC:1.2.4.2]
CD36_33050  dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex, putative [KO:K00658] [EC:2.3.1.61]
CD36_33030  dihydrolipoamide dehydrogenase, putative [KO:K00382] [EC:1.8.1.4]
CD36_01550  succinyl-coa ligase [GDP-forming] alpha-chain, mitochondrial precursor, putative [KO:K01899] [EC:6.2.1.4 6.2.1.5]
CD36_32310  succinyl-CoA ligase, beta subunit, mitochondrial precursor, putative [KO:K01900] [EC:6.2.1.4 6.2.1.5]
CD36_05000  flavoprotein subunit of mitochondrial complex II, putative [KO:K00234] [EC:1.3.5.1]
CD36_46090  flavoprotein subunit of succinate dehydrogenase, putative [KO:K00234] [EC:1.3.5.1]
CD36_30410  succinate dehydrogenase, iron-sulfur protein subunit, mitochondrial precursor, putative [KO:K00235] [EC:1.3.5.1]
CD36_16550  succinate dehydrogenase cytochrome b subunit, mitochondrial precursor, putative [KO:K00236]
CD36_54880  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial precursor, putative [KO:K00237]
CD36_03670  hypothetical protein [KO:K00237]
CD36_29890  fumarase, putative [KO:K01679] [EC:4.2.1.2]
CD36_87520  fumarate hydratase, mitochondrial precursor, putative [KO:K01679] [EC:4.2.1.2]
CD36_24490  malate dehydrogenase, mitochondrial precursor, putative [KO:K00026] [EC:1.1.1.37]
CD36_25650  malate dehydrogenase, mitochondrial precursor, putative [KO:K00026] [EC:1.1.1.37]
CD36_41790  malate dehydrogenase, mitochondrial precursor, putative [KO:K00026] [EC:1.1.1.37]
CD36_43660  pyruvate carboxylase isoform, putative [KO:K01958] [EC:6.4.1.1]
CD36_25230  PCK1; phosphoenolpyruvate carboxykinase, putative [KO:K01610] [EC:4.1.1.49]
CD36_46580  E1 alpha subunit of the pyruvate dehydrogenase complex, mitochondrial precursor, putative [KO:K00161] [EC:1.2.4.1]
CD36_43720  E1 beta subunit of the pyruvate dehydrogenase (PDH) complex, putative [KO:K00162] [EC:1.2.4.1]
CD36_71470  dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex, putative [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cdu00010  Glycolysis / Gluconeogenesis
cdu00053  Ascorbate and aldarate metabolism
cdu00061  Fatty acid biosynthesis
cdu00062  Fatty acid elongation
cdu00071  Fatty acid degradation
cdu00190  Oxidative phosphorylation
cdu00220  Arginine biosynthesis
cdu00250  Alanine, aspartate and glutamate metabolism
cdu00280  Valine, leucine and isoleucine degradation
cdu00350  Tyrosine metabolism
cdu00470  D-Amino acid metabolism
cdu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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