KEGG   PATHWAY: cgrn00020
Entry
cgrn00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Cutibacterium granulosum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cgrn00020  Citrate cycle (TCA cycle)
cgrn00020

Module
cgrn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cgrn00020]
cgrn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cgrn00020]
cgrn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cgrn00020]
cgrn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cgrn00020]
Other DBs
GO: 0006099
Organism
Cutibacterium granulosum [GN:cgrn]
Gene
4412665_01540  gltA2_2; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
4412665_00392  gltA2_1; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
4412665_01244  acnA; Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
4412665_00732  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
4412665_01416  kgd; 2-oxoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
4412665_01290  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
4412665_00082  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
4412665_00083  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
4412665_01822  sucD_2; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
4412665_01823  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
4412665_00653  scpC_1; Propionyl-CoA:succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
4412665_01114  frdA; Fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
4412665_01115  frdB; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
4412665_01113  Succinate dehydrogenase/fumarate reductase, cytochrome b subunit [KO:K00241]
4412665_00396  fumC-1; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
4412665_00730  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
4412665_00987  dlaT; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
4412665_00537  porA; Pyruvate synthase subunit porA [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cgrn00010  Glycolysis / Gluconeogenesis
cgrn00053  Ascorbate and aldarate metabolism
cgrn00061  Fatty acid biosynthesis
cgrn00190  Oxidative phosphorylation
cgrn00220  Arginine biosynthesis
cgrn00250  Alanine, aspartate and glutamate metabolism
cgrn00280  Valine, leucine and isoleucine degradation
cgrn00350  Tyrosine metabolism
cgrn00470  D-Amino acid metabolism
cgrn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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