KEGG   PATHWAY: chig00020
Entry
chig00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Colletotrichum higginsianum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
chig00020  Citrate cycle (TCA cycle)
chig00020

Module
chig_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:chig00020]
chig_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:chig00020]
chig_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:chig00020]
chig_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:chig00020]
chig_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:chig00020]
Other DBs
GO: 0006099
Organism
Colletotrichum higginsianum [GN:chig]
Gene
CH63R_06685  Citrate synthase [KO:K01647] [EC:2.3.3.1]
CH63R_06953  Citrate synthase [KO:K01647] [EC:2.3.3.1]
CH63R_12651  Citrate synthase [KO:K01647] [EC:2.3.3.1]
CH63R_10882  ATP citrate lyase subunit putative [KO:K01648] [EC:2.3.3.8]
CH63R_10883  ATP-citrate synthase subunit 1 [KO:K01648] [EC:2.3.3.8]
CH63R_06152  Aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
CH63R_11912  Aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
CH63R_09103  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
CH63R_07762  Isocitrate dehydrogenase [NAD] subunit, mitochondrial [KO:K00030] [EC:1.1.1.41]
CH63R_11198  Isocitrate dehydrogenase [NAD] subunit, mitochondrial [KO:K00030] [EC:1.1.1.41]
CH63R_00273  Oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
CH63R_12875  Oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
CH63R_00274  Dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CH63R_01108  Dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CH63R_01136  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CH63R_08804  Succinate-CoA ligase [KO:K01899] [EC:6.2.1.4 6.2.1.5]
CH63R_13289  Succinyl-CoA ligase subunit alpha [KO:K01899] [EC:6.2.1.4 6.2.1.5]
CH63R_08762  CoA-ligase [KO:K01900] [EC:6.2.1.4 6.2.1.5]
CH63R_10222  Succinyl-CoA ligase subunit beta [KO:K01900] [EC:6.2.1.4 6.2.1.5]
CH63R_00524  Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
CH63R_00525  Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
CH63R_03703  Succinate dehydrogenase cytochrome b subunit [KO:K00236]
CH63R_05788  CybS protein [KO:K00237]
CH63R_07445  Fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CH63R_02636  Malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
CH63R_05304  Malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
CH63R_01713  Malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
CH63R_11359  Pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CH63R_06404  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
CH63R_02682  Pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
CH63R_07676  Transketolase [KO:K00162] [EC:1.2.4.1]
CH63R_05204  Acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
chig00010  Glycolysis / Gluconeogenesis
chig00053  Ascorbate and aldarate metabolism
chig00061  Fatty acid biosynthesis
chig00062  Fatty acid elongation
chig00071  Fatty acid degradation
chig00190  Oxidative phosphorylation
chig00220  Arginine biosynthesis
chig00250  Alanine, aspartate and glutamate metabolism
chig00280  Valine, leucine and isoleucine degradation
chig00350  Tyrosine metabolism
chig00470  D-Amino acid metabolism
chig00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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