KEGG   PATHWAY: chlo00020
Entry
chlo00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Chloracidobacterium sp. MS 40/45
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
chlo00020  Citrate cycle (TCA cycle)
chlo00020

Module
chlo_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:chlo00020]
chlo_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:chlo00020]
chlo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:chlo00020]
chlo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:chlo00020]
chlo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:chlo00020]
Other DBs
GO: 0006099
Organism
Chloracidobacterium sp. MS 40/45 [GN:chlo]
Gene
J8C02_00555  citrate synthase [KO:K01647] [EC:2.3.3.1]
J8C02_11670  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
J8C02_09355  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
J8C02_14575  isocitrate dehydrogenase (NAD(+)) [KO:K00030] [EC:1.1.1.41]
J8C02_10980  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
J8C02_14335  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
J8C02_14330  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
J8C02_01550  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
J8C02_05715  CoA-binding protein [KO:K01902] [EC:6.2.1.5]
J8C02_08580  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
J8C02_02700  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
J8C02_02690  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
J8C02_02705  succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
J8C02_08350  hypothetical protein [KO:K01676] [EC:4.2.1.2]
J8C02_01650  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
J8C02_11800  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
J8C02_03385  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
J8C02_05650  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
J8C02_03630  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
chlo00010  Glycolysis / Gluconeogenesis
chlo00053  Ascorbate and aldarate metabolism
chlo00061  Fatty acid biosynthesis
chlo00071  Fatty acid degradation
chlo00190  Oxidative phosphorylation
chlo00220  Arginine biosynthesis
chlo00250  Alanine, aspartate and glutamate metabolism
chlo00280  Valine, leucine and isoleucine degradation
chlo00350  Tyrosine metabolism
chlo00470  D-Amino acid metabolism
chlo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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