KEGG   PATHWAY: cif00970
Entry
cif00970                    Pathway                                
Name
Aminoacyl-tRNA biosynthesis - Citrobacter sp. FDAARGOS_156
Class
Genetic Information Processing; Translation
Pathway map
cif00970  Aminoacyl-tRNA biosynthesis
cif00970

Organism
Citrobacter sp. FDAARGOS_156 [GN:cif]
Gene
AL515_16275  tRNA-Ala [KO:K14218]
AL515_01915  tRNA-Ala [KO:K14218]
AL515_16280  tRNA-Ala [KO:K14218]
AL515_02485  tRNA-Ala [KO:K14218]
AL515_21195  tRNA-Ala [KO:K14218]
AL515_01655  tRNA-Arg [KO:K14219]
AL515_07370  tRNA-Arg [KO:K14219]
AL515_16160  tRNA-Arg [KO:K14219]
AL515_18090  tRNA-Arg [KO:K14219]
AL515_18085  tRNA-Arg [KO:K14219]
AL515_18095  tRNA-Arg [KO:K14219]
AL515_18100  tRNA-Arg [KO:K14219]
AL515_10225  tRNA-Asn [KO:K14220]
AL515_14595  tRNA-Asn [KO:K14220]
AL515_10215  tRNA-Asn [KO:K14220]
AL515_14610  tRNA-Asn [KO:K14220]
AL515_05770  tRNA-Asp [KO:K14221]
AL515_05825  tRNA-Asp [KO:K14221]
AL515_01500  tRNA-Asp [KO:K14221]
AL515_14355  tRNA-Cys [KO:K14222]
AL515_07950  tRNA-Gln [KO:K14223]
AL515_07935  tRNA-Gln [KO:K14223]
AL515_07955  tRNA-Gln [KO:K14223]
AL515_07940  tRNA-Gln [KO:K14223]
AL515_02700  tRNA-Glu [KO:K14224]
AL515_05755  tRNA-Glu [KO:K14224]
AL515_17440  tRNA-Glu [KO:K14224]
AL515_01485  tRNA-Glu [KO:K14224]
AL515_03705  tRNA-Gly [KO:K14225]
AL515_02525  tRNA-Gly [KO:K14225]
AL515_03715  tRNA-Gly [KO:K14225]
AL515_18970  tRNA-Gly [KO:K14225]
AL515_03710  tRNA-Gly [KO:K14225]
AL515_14360  tRNA-Gly [KO:K14225]
AL515_01660  tRNA-His [KO:K14226]
AL515_01910  tRNA-Ile [KO:K14227]
AL515_21200  tRNA-Ile [KO:K14227]
AL515_02480  tRNA-Ile [KO:K14227]
AL515_07960  tRNA-Leu [KO:K14228]
AL515_14350  tRNA-Leu [KO:K14228]
AL515_20690  tRNA-Leu [KO:K14228]
AL515_04285  tRNA-Leu [KO:K14228]
AL515_04650  tRNA-Leu [KO:K14228]
AL515_04660  tRNA-Leu [KO:K14228]
AL515_01665  tRNA-Leu [KO:K14228]
AL515_04655  tRNA-Leu [KO:K14228]
AL515_08340  tRNA-Lys [KO:K14229]
AL515_16315  tRNA-Lys [KO:K14229]
AL515_08325  tRNA-Lys [KO:K14229]
AL515_08345  tRNA-Lys [KO:K14229]
AL515_08350  tRNA-Lys [KO:K14229]
AL515_18675  tRNA-Met [KO:K14230]
AL515_18680  tRNA-Met [KO:K14230]
AL515_19965  tRNA-Met [KO:K14230]
AL515_07945  tRNA-Met [KO:K14230]
AL515_07965  tRNA-Met [KO:K14230]
AL515_18685  tRNA-Met [KO:K14230]
AL515_20680  tRNA-Met [KO:K14230]
AL515_03545  tRNA-Phe [KO:K14231]
AL515_19385  tRNA-Phe [KO:K14231]
AL515_15450  tRNA-Pro [KO:K14232]
AL515_01670  tRNA-Pro [KO:K14232]
AL515_00265  tRNA-Pro [KO:K14232]
AL515_08920  tRNA-Ser [KO:K14233]
AL515_09325  tRNA-Ser [KO:K14233]
AL515_14970  tRNA-Ser [KO:K14233]
AL515_14585  tRNA-Ser [KO:K14233]
AL515_18105  tRNA-Ser [KO:K14233]
AL515_21180  tRNA-Thr [KO:K14234]
AL515_06195  tRNA-Thr [KO:K14234]
AL515_02530  tRNA-Thr [KO:K14234]
AL515_02515  tRNA-Thr [KO:K14234]
AL515_01505  tRNA-Trp [KO:K14235]
AL515_02520  tRNA-Tyr [KO:K14236]
AL515_13330  tRNA-Tyr [KO:K14236]
AL515_13340  tRNA-Tyr [KO:K14236]
AL515_11280  tRNA-Val [KO:K14237]
AL515_16305  tRNA-Val [KO:K14237]
AL515_11285  tRNA-Val [KO:K14237]
AL515_16310  tRNA-Val [KO:K14237]
AL515_16300  tRNA-Val [KO:K14237]
AL515_08335  tRNA-Val [KO:K14237]
AL515_00960  tRNA-Sec [KO:K14238]
AL515_16295  glutamate--tRNA ligase [KO:K01885] [EC:6.1.1.17]
AL515_08000  glutamine--tRNA ligase [KO:K01886] [EC:6.1.1.18]
AL515_18115  alanine--tRNA ligase [KO:K01872] [EC:6.1.1.7]
AL515_14095  aspS; aspartate--tRNA ligase [KO:K01876] [EC:6.1.1.12]
AL515_09155  asparagine--tRNA ligase [KO:K01893] [EC:6.1.1.22]
AL515_00355  glyQ; glycine--tRNA ligase subunit alpha [KO:K01878] [EC:6.1.1.14]
AL515_00350  glycine--tRNA ligase subunit beta [KO:K01879] [EC:6.1.1.14]
AL515_10845  threonine--tRNA ligase [KO:K01868] [EC:6.1.1.3]
AL515_08985  serine--tRNA ligase [KO:K01875] [EC:6.1.1.11]
AL515_00510  L-seryl-tRNA(Sec) selenium transferase [KO:K01042] [EC:2.9.1.1]
AL515_04075  DgaE family pyridoxal phosphate-dependent ammonia lyase [KO:K01042] [EC:2.9.1.1]
AL515_07295  cysS; cysteine--tRNA ligase [KO:K01883] [EC:6.1.1.16]
AL515_15095  metG; methionine--tRNA ligase [KO:K01874] [EC:6.1.1.10]
AL515_21260  methionyl-tRNA formyltransferase [KO:K00604] [EC:2.1.2.9]
AL515_04225  valine--tRNA ligase [KO:K01873] [EC:6.1.1.9]
AL515_07865  leuS; leucine--tRNA ligase [KO:K01869] [EC:6.1.1.4]
AL515_04935  isoleucine--tRNA ligase [KO:K01870] [EC:6.1.1.5]
AL515_18985  lysS; lysine--tRNA ligase [KO:K04567] [EC:6.1.1.6]
AL515_14135  arginine--tRNA ligase [KO:K01887] [EC:6.1.1.19]
AL515_05715  proS; proline--tRNA ligase [KO:K01881] [EC:6.1.1.15]
AL515_20475  histidine--tRNA ligase [KO:K01892] [EC:6.1.1.21]
AL515_20480  histidine--tRNA ligase [KO:K01892] [EC:6.1.1.21]
AL515_17025  histidine--tRNA ligase [KO:K01892] [EC:6.1.1.21]
AL515_10865  phenylalanine--tRNA ligase subunit alpha [KO:K01889] [EC:6.1.1.20]
AL515_10870  phenylalanine--tRNA ligase subunit beta [KO:K01890] [EC:6.1.1.20]
AL515_11595  tyrosine--tRNA ligase [KO:K01866] [EC:6.1.1.1]
AL515_21600  trpS; tryptophan--tRNA ligase [KO:K01867] [EC:6.1.1.2]
AL515_11450  trpS; tryptophan--tRNA ligase [KO:K01867] [EC:6.1.1.2]
Compound
C00025  L-Glutamate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00078  L-Tryptophan
C00079  L-Phenylalanine
C00082  L-Tyrosine
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00123  L-Leucine
C00135  L-Histidine
C00148  L-Proline
C00152  L-Asparagine
C00183  L-Valine
C00188  L-Threonine
C00234  10-Formyltetrahydrofolate
C00407  L-Isoleucine
C00886  L-Alanyl-tRNA
C01005  O-Phospho-L-serine
C01931  L-Lysyl-tRNA
C02047  L-Leucyl-tRNA
C02163  L-Arginyl-tRNA(Arg)
C02282  Glutaminyl-tRNA
C02412  Glycyl-tRNA(Gly)
C02430  L-Methionyl-tRNA
C02553  L-Seryl-tRNA(Ser)
C02554  L-Valyl-tRNA(Val)
C02702  L-Prolyl-tRNA(Pro)
C02839  L-Tyrosyl-tRNA(Tyr)
C02984  L-Aspartyl-tRNA(Asp)
C02987  L-Glutamyl-tRNA(Glu)
C02988  L-Histidyl-tRNA(His)
C02992  L-Threonyl-tRNA(Thr)
C03125  L-Cysteinyl-tRNA(Cys)
C03127  L-Isoleucyl-tRNA(Ile)
C03294  N-Formylmethionyl-tRNA
C03402  L-Asparaginyl-tRNA(Asn)
C03511  L-Phenylalanyl-tRNA(Phe)
C03512  L-Tryptophanyl-tRNA(Trp)
C06112  L-Glutamyl-tRNA(Gln)
C06113  L-Aspartyl-tRNA(Asn)
C06481  L-Seryl-tRNA(Sec)
C06482  L-Selenocysteinyl-tRNA(Sec)
C16138  L-Pyrrolysine
C16638  O-Phosphoseryl-tRNA(Sec)
C17022  O-Phosphoseryl-tRNA(Cys)
C17027  L-Pyrrolysyl-tRNA(Pyl)
Reference
PMID:18252769
  Authors
Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D
  Title
From one amino acid to another: tRNA-dependent amino acid biosynthesis.
  Journal
Nucleic Acids Res 36:1813-25 (2008)
DOI:10.1093/nar/gkn015
Reference
PMID:15314242
  Authors
Polycarpo C, Ambrogelly A, Berube A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Soll D
  Title
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.
  Journal
Proc Natl Acad Sci U S A 101:12450-4 (2004)
DOI:10.1073/pnas.0405362101
Related
pathway
cif00250  Alanine, aspartate and glutamate metabolism
cif00260  Glycine, serine and threonine metabolism
cif00270  Cysteine and methionine metabolism
cif00290  Valine, leucine and isoleucine biosynthesis
cif00300  Lysine biosynthesis
cif00330  Arginine and proline metabolism
cif00340  Histidine metabolism
cif00380  Tryptophan metabolism
cif00400  Phenylalanine, tyrosine and tryptophan biosynthesis
KO pathway
ko00970   
LinkDB

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