KEGG   PATHWAY: cill00630
Entry
cill00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Carya illinoinensis (pecan)
Class
Metabolism; Carbohydrate metabolism
Pathway map
cill00630  Glyoxylate and dicarboxylate metabolism
cill00630

Module
cill_M00012  Glyoxylate cycle [PATH:cill00630]
cill_M00621  Glycine cleavage system [PATH:cill00630]
Other DBs
GO: 0046487 0043648
Organism
Carya illinoinensis (pecan) [GN:cill]
Gene
122303824  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
122303310  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X1 [KO:K01895] [EC:6.2.1.1]
122318224  acetate--CoA ligase CCL3 isoform X1 [KO:K01913] [EC:6.2.1.1 6.2.1.2]
122282015  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
122277016  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
122300681  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
122292290  malate dehydrogenase-like isoform X1 [KO:K00025] [EC:1.1.1.37]
122280792  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
122281637  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
122316792  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
122289519  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
122319374  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
122299187  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
122304182  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
122307617  citrate synthase, glyoxysomal-like isoform X1 [KO:K01647] [EC:2.3.3.1]
122281497  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
122315938  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
122303810  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
122307351  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
122279220  acetyl-CoA acetyltransferase, cytosolic 1 isoform X1 [KO:K00626] [EC:2.3.1.9]
122305503  acetyl-CoA acetyltransferase, cytosolic 1 isoform X1 [KO:K00626] [EC:2.3.1.9]
122279967  peroxisomal (S)-2-hydroxy-acid oxidase-like isoform X1 [KO:K11517] [EC:1.1.3.15]
122280303  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like isoform X1 [KO:K11517] [EC:1.1.3.15]
122280344  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like isoform X1 [KO:K11517] [EC:1.1.3.15]
122275676  peroxisomal (S)-2-hydroxy-acid oxidase [KO:K11517] [EC:1.1.3.15]
122315684  catalase isozyme 3-like [KO:K03781] [EC:1.11.1.6]
122315685  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
122319174  catalase isozyme 3-like [KO:K03781] [EC:1.11.1.6]
122289637  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
122290461  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
122286344  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
122281234  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
122319173  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
122308819  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
122276401  phosphoglycolate phosphatase 2-like isoform X1 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
122316599  phosphoglycolate phosphatase 1A, chloroplastic-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
122275889  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
122295875  ribulose bisphosphate carboxylase small subunit, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
122295876  ribulose bisphosphate carboxylase small subunit, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
122315249  ribulose bisphosphate carboxylase small subunit, chloroplastic 3-like [KO:K01602] [EC:4.1.1.39]
122302812  ribulose bisphosphate carboxylase small subunit, chloroplastic [KO:K01602] [EC:4.1.1.39]
122294708  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
122291862  serine--glyoxylate aminotransferase-like [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
122311265  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
122314303  glutamate--glyoxylate aminotransferase 2-like [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
122278315  ferredoxin-dependent glutamate synthase, chloroplastic-like isoform X1 [KO:K00284] [EC:1.4.7.1]
122275774  ferredoxin-dependent glutamate synthase, chloroplastic [KO:K00284] [EC:1.4.7.1]
122310845  glutamine synthetase nodule isozyme-like [KO:K01915] [EC:6.3.1.2]
122298485  glutamine synthetase nodule isozyme-like isoform X1 [KO:K01915] [EC:6.3.1.2]
122300493  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
122302912  glutamine synthetase cytosolic isozyme [KO:K01915] [EC:6.3.1.2]
122307317  glutamine synthetase cytosolic isozyme 1 [KO:K01915] [EC:6.3.1.2]
122274449  glutamine synthetase leaf isozyme, chloroplastic-like isoform X1 [KO:K01915] [EC:6.3.1.2]
122309608  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
122310552  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
122313457  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
122300173  serine hydroxymethyltransferase 3, chloroplastic [KO:K00600] [EC:2.1.2.1]
122300256  serine hydroxymethyltransferase 4-like [KO:K00600] [EC:2.1.2.1]
122300258  serine hydroxymethyltransferase 4-like [KO:K00600] [EC:2.1.2.1]
122315742  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
122316844  serine hydroxymethyltransferase 2, mitochondrial isoform X1 [KO:K00600] [EC:2.1.2.1]
122317345  serine hydroxymethyltransferase, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
122297560  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
122276012  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
122279688  aminomethyltransferase, mitochondrial-like [KO:K00605] [EC:2.1.2.10]
122300334  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
122317458  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
122318151  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
122276240  glycine cleavage system H protein 2, mitochondrial-like [KO:K02437]
122280110  glycine cleavage system H protein 2, mitochondrial-like [KO:K02437]
122280546  glycine cleavage system H protein 3, mitochondrial-like [KO:K02437]
122289078  glycine cleavage system H protein, mitochondrial-like [KO:K02437]
122301079  D-glycerate 3-kinase, chloroplastic [KO:K15918] [EC:2.7.1.31]
122302575  formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]
122306842  formate dehydrogenase, mitochondrial-like [KO:K00122] [EC:1.17.1.9]
122282776  formyltetrahydrofolate deformylase 1, mitochondrial isoform X1 [KO:K01433] [EC:3.5.1.10]
122290403  formyltetrahydrofolate deformylase 1, mitochondrial-like isoform X1 [KO:K01433] [EC:3.5.1.10]
122296032  formamidase-like isoform X1 [KO:K01455] [EC:3.5.1.49]
122303245  LOW QUALITY PROTEIN: probable CoA ligase CCL9 [KO:K22133] [EC:6.2.1.8]
122283003  probable CoA ligase CCL9 [KO:K22133] [EC:6.2.1.8]
122289507  probable CoA ligase CCL9 [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
cill00010  Glycolysis / Gluconeogenesis
cill00020  Citrate cycle (TCA cycle)
cill00030  Pentose phosphate pathway
cill00053  Ascorbate and aldarate metabolism
cill00071  Fatty acid degradation
cill00230  Purine metabolism
cill00250  Alanine, aspartate and glutamate metabolism
cill00260  Glycine, serine and threonine metabolism
cill00620  Pyruvate metabolism
cill00710  Carbon fixation by Calvin cycle
cill00750  Vitamin B6 metabolism
cill00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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