KEGG   PATHWAY: clup00020
Entry
clup00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Colletotrichum lupini
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
clup00020  Citrate cycle (TCA cycle)
clup00020

Module
clup_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:clup00020]
clup_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:clup00020]
Other DBs
GO: 0006099
Organism
Colletotrichum lupini [GN:clup]
Gene
CLUP02_15099  citrate synthase [KO:K01647] [EC:2.3.3.1]
CLUP02_00684  citrate synthase [KO:K01647] [EC:2.3.3.1]
CLUP02_16843  uncharacterized protein [KO:K01647] [EC:2.3.3.1]
CLUP02_09417  2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
CLUP02_02185  uncharacterized protein [KO:K01648] [EC:2.3.3.8]
CLUP02_02189  ATP-citrate synthase subunit 1 [KO:K01648] [EC:2.3.3.8]
CLUP02_14234  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
CLUP02_12452  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CLUP02_10555  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CLUP02_17306  isocitrate dehydrogenase subunit 2 [KO:K00030] [EC:1.1.1.41]
CLUP02_11683  isocitrate dehydrogenase subunit 1 [KO:K00030] [EC:1.1.1.41]
CLUP02_04917  oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
CLUP02_04918  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CLUP02_06189  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CLUP02_09633  succinate-CoA ligase [KO:K01899] [EC:6.2.1.4 6.2.1.5]
CLUP02_10984  succinate-CoA ligase [KO:K01899] [EC:6.2.1.4 6.2.1.5]
CLUP02_05482  succinate dehydrogenase [KO:K00234] [EC:1.3.5.1]
CLUP02_05484  succinate dehydrogenase iron-sulfur subunit [KO:K00235] [EC:1.3.5.1]
CLUP02_07274  succinate dehydrogenase cytochrome b subunit [KO:K00236]
CLUP02_13686  CybS protein [KO:K00237]
CLUP02_08554  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CLUP02_15872  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
CLUP02_03575  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
CLUP02_07003  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
CLUP02_11871  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CLUP02_16556  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
CLUP02_03624  pyruvate dehydrogenase E1 component [KO:K00161] [EC:1.2.4.1]
CLUP02_15797  dihydrolipoyllysine-residue acetyltransferase component-pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
clup00010  Glycolysis / Gluconeogenesis
clup00053  Ascorbate and aldarate metabolism
clup00061  Fatty acid biosynthesis
clup00062  Fatty acid elongation
clup00071  Fatty acid degradation
clup00190  Oxidative phosphorylation
clup00220  Arginine biosynthesis
clup00250  Alanine, aspartate and glutamate metabolism
clup00280  Valine, leucine and isoleucine degradation
clup00350  Tyrosine metabolism
clup00470  D-Amino acid metabolism
clup00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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