KEGG   PATHWAY: cma00020
Entry
cma00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Caldivirga maquilingensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cma00020  Citrate cycle (TCA cycle)
cma00020

Module
cma_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cma00020]
cma_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cma00020]
cma_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cma00020]
cma_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cma00020]
cma_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cma00020]
Other DBs
GO: 0006099
Organism
Caldivirga maquilingensis [GN:cma]
Gene
Cmaq_0306  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
Cmaq_1917  pyruvate carboxyltransferase [KO:K05942] [EC:2.3.3.3]
Cmaq_0626  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Cmaq_1738  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Cmaq_0249  pyridine nucleotide-disulphide oxidoreductase dimerisation region [KO:K00382] [EC:1.8.1.4]
Cmaq_1071  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Cmaq_1072  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Cmaq_0785  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Cmaq_1221  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Cmaq_1220  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Cmaq_1869  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Cmaq_1355  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Cmaq_1356  succinate dehydrogenase/fumarate reductase, cytochrome b subunit [KO:K00241]
Cmaq_1357  conserved hypothetical protein [KO:K00242]
Cmaq_1579  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [KO:K01677] [EC:4.2.1.2]
Cmaq_1616  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01678] [EC:4.2.1.2]
Cmaq_0931  fumarate lyase [KO:K01679] [EC:4.2.1.2]
Cmaq_1675  Lactate/malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Cmaq_0716  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Cmaq_1712  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Cmaq_1861  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Cmaq_1860  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00170] [EC:1.2.7.1]
Cmaq_1713  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00170] [EC:1.2.7.1]
Cmaq_1863  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Cmaq_1710  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Cmaq_1862  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Cmaq_1711  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cma00010  Glycolysis / Gluconeogenesis
cma00053  Ascorbate and aldarate metabolism
cma00061  Fatty acid biosynthesis
cma00071  Fatty acid degradation
cma00190  Oxidative phosphorylation
cma00220  Arginine biosynthesis
cma00250  Alanine, aspartate and glutamate metabolism
cma00280  Valine, leucine and isoleucine degradation
cma00350  Tyrosine metabolism
cma00470  D-Amino acid metabolism
cma00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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