KEGG   PATHWAY: cmar00020
Entry
cmar00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Celeribacter marinus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cmar00020  Citrate cycle (TCA cycle)
cmar00020

Module
cmar_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cmar00020]
cmar_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cmar00020]
cmar_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cmar00020]
Other DBs
GO: 0006099
Organism
Celeribacter marinus [GN:cmar]
Gene
IMCC12053_734  citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
IMCC12053_691  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
IMCC12053_1010  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
IMCC12053_633  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
IMCC12053_3026  dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
IMCC12053_3028  dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase [KO:K00382] [EC:1.8.1.4]
IMCC12053_1994  dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex [KO:K00382] [EC:1.8.1.4]
IMCC12053_707  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
IMCC12053_3025  succinyl-CoA ligase [ADP-forming] alpha chain [KO:K01902] [EC:6.2.1.5]
IMCC12053_3024  succinyl-CoA ligase [ADP-forming] beta chain [KO:K01903] [EC:6.2.1.5]
IMCC12053_3014  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
IMCC12053_3012  succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
IMCC12053_3016  succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
IMCC12053_3015  succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
IMCC12053_355  fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
IMCC12053_3022  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
IMCC12053_844  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
IMCC12053_1516  phosphoenolpyruvate carboxykinase, ATP-dependent [KO:K01610] [EC:4.1.1.49]
IMCC12053_2101  pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
IMCC12053_2102  pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
IMCC12053_2103  dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cmar00010  Glycolysis / Gluconeogenesis
cmar00053  Ascorbate and aldarate metabolism
cmar00061  Fatty acid biosynthesis
cmar00071  Fatty acid degradation
cmar00190  Oxidative phosphorylation
cmar00220  Arginine biosynthesis
cmar00250  Alanine, aspartate and glutamate metabolism
cmar00280  Valine, leucine and isoleucine degradation
cmar00350  Tyrosine metabolism
cmar00470  D-Amino acid metabolism
cmar00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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