KEGG   PATHWAY: cmor00020
Entry
cmor00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Caldicellulosiruptor morganii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cmor00020  Citrate cycle (TCA cycle)
cmor00020

Module
cmor_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cmor00020]
cmor_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cmor00020]
Other DBs
GO: 0006099
Organism
Caldicellulosiruptor morganii [GN:cmor]
Gene
OTK00_000421  2-isopropylmalate synthase [KO:K05942] [EC:2.3.3.3]
OTK00_000436  pyruvate carboxyltransferase [KO:K05942] [EC:2.3.3.3]
OTK00_000473  2-isopropylmalate synthase [KO:K05942] [EC:2.3.3.3]
OTK00_000440  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
OTK00_000441  isocitrate/isopropylmalate dehydrogenase family protein [KO:K00030] [EC:1.1.1.41]
OTK00_001616  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
OTK00_001615  thiamine pyrophosphate-dependent enzyme [KO:K00175] [EC:1.2.7.3 1.2.7.11]
OTK00_001614  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
OTK00_001617  4Fe-4S binding protein [KO:K00176] [EC:1.2.7.3]
OTK00_002397  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
OTK00_000413  FumA C-terminus/TtdB family hydratase beta subunit [KO:K01678] [EC:4.2.1.2]
OTK00_000212  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
OTK00_001710  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
OTK00_000906  thiamine pyrophosphate-dependent enzyme [KO:K00169] [EC:1.2.7.1]
OTK00_001709  thiamine pyrophosphate-dependent enzyme [KO:K00170] [EC:1.2.7.1]
OTK00_001712  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
OTK00_000905  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
OTK00_001711  4Fe-4S binding protein [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cmor00010  Glycolysis / Gluconeogenesis
cmor00061  Fatty acid biosynthesis
cmor00190  Oxidative phosphorylation
cmor00220  Arginine biosynthesis
cmor00250  Alanine, aspartate and glutamate metabolism
cmor00280  Valine, leucine and isoleucine degradation
cmor00350  Tyrosine metabolism
cmor00470  D-Amino acid metabolism
cmor00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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