KEGG   PATHWAY: cmt00020
Entry
cmt00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Cordyceps militaris
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cmt00020  Citrate cycle (TCA cycle)
cmt00020

Module
cmt_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cmt00020]
cmt_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cmt00020]
cmt_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cmt00020]
cmt_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cmt00020]
cmt_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cmt00020]
Other DBs
GO: 0006099
Organism
Cordyceps militaris [GN:cmt]
Gene
CCM_03132  peroxysomal citrate synthase [KO:K01647] [EC:2.3.3.1]
CCM_08876  Citrate synthase [KO:K01647] [EC:2.3.3.1]
CCM_00209  ATP-citrate synthase subunit 1 [KO:K01648] [EC:2.3.3.8]
CCM_00210  ATP citrate lyase, subunit 2 [KO:K01648] [EC:2.3.3.8]
CCM_01191  Aconitase-like core [KO:K01681] [EC:4.2.1.3]
CCM_08506  isocitrate dehydrogenase Idp1 [KO:K00031] [EC:1.1.1.42]
CCM_04171  isocitrate dehydrogenase subunit 2 [KO:K00030] [EC:1.1.1.41]
CCM_00814  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
CCM_07430  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CCM_01205  dihydrolipoamide succinyltransferase, putative [KO:K00658] [EC:2.3.1.61]
CCM_01222  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CCM_07140  succinyl-CoA ligase alpha-chain [KO:K01899] [EC:6.2.1.4 6.2.1.5]
CCM_05757  succinate-CoA ligase (alpha subunit) [KO:K01899] [EC:6.2.1.4 6.2.1.5]
CCM_09028  succinyl-CoA ligase [KO:K01900] [EC:6.2.1.4 6.2.1.5]
CCM_05749  succinyl-CoA synthetase beta chain [KO:K01900] [EC:6.2.1.4 6.2.1.5]
CCM_02366  succinate dehydrogenase flavoprotein subunit [KO:K00234] [EC:1.3.5.1]
CCM_07146  succinate dehydrogenase iron-sulfur protein [KO:K00235] [EC:1.3.5.1]
CCM_09238  succinate dehydrogenase cytochrome b560 subunit [KO:K00236]
CCM_00099  succinate dehydrogenase cytochrome b small subunit [KO:K00237]
CCM_03450  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CCM_05260  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
CCM_05784  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
CCM_03243  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CCM_02207  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CCM_04470  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
CCM_01079  pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
CCM_08657  pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
CCM_05680  pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase component [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cmt00010  Glycolysis / Gluconeogenesis
cmt00053  Ascorbate and aldarate metabolism
cmt00061  Fatty acid biosynthesis
cmt00062  Fatty acid elongation
cmt00071  Fatty acid degradation
cmt00190  Oxidative phosphorylation
cmt00220  Arginine biosynthesis
cmt00250  Alanine, aspartate and glutamate metabolism
cmt00280  Valine, leucine and isoleucine degradation
cmt00350  Tyrosine metabolism
cmt00470  D-Amino acid metabolism
cmt00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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