KEGG   PATHWAY: cng00020
Entry
cng00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Cryptococcus neoformans var. grubii H99
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cng00020  Citrate cycle (TCA cycle)
cng00020

Module
cng_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cng00020]
cng_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cng00020]
cng_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cng00020]
cng_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cng00020]
cng_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cng00020]
Other DBs
GO: 0006099
Organism
Cryptococcus neoformans var. grubii H99 [GN:cng]
Gene
CNAG_00061  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
CNAG_04640  ATP-citrate synthase subunit 1 [KO:K01648] [EC:2.3.3.8]
CNAG_01137  aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
CNAG_03427  aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
CNAG_03920  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
CNAG_07363  isocitrate dehydrogenase, NAD-dependent [KO:K00030] [EC:1.1.1.41]
CNAG_07851  isocitrate dehydrogenase, NAD-dependent [KO:K00030] [EC:1.1.1.41]
CNAG_03674  oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
CNAG_03596  2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [KO:K00658] [EC:2.3.1.61]
CNAG_07004  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CNAG_03375  succinyl-CoA synthetase alpha subunit [KO:K01899] [EC:6.2.1.4 6.2.1.5]
CNAG_00747  succinyl-CoA synthetase beta subunit [KO:K01900] [EC:6.2.1.4 6.2.1.5]
CNAG_04189  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
CNAG_03226  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
CNAG_07356  succinate dehydrogenase, cytochrome b556 subunit [KO:K00236]
CNAG_06723  succinate dehydrogenase (ubiquinone) membrane anchor subunit [KO:K00237]
CNAG_01657  fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
CNAG_03266  malate dehydrogenase, NAD-dependent [KO:K00026] [EC:1.1.1.37]
CNAG_03225  malate dehydrogenase, NAD-dependent [KO:K00026] [EC:1.1.1.37]
CNAG_05907  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CNAG_04217  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CNAG_07660  pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
CNAG_05059  pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
CNAG_01120  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cng00010  Glycolysis / Gluconeogenesis
cng00053  Ascorbate and aldarate metabolism
cng00061  Fatty acid biosynthesis
cng00062  Fatty acid elongation
cng00071  Fatty acid degradation
cng00190  Oxidative phosphorylation
cng00220  Arginine biosynthesis
cng00250  Alanine, aspartate and glutamate metabolism
cng00280  Valine, leucine and isoleucine degradation
cng00350  Tyrosine metabolism
cng00470  D-Amino acid metabolism
cng00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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