KEGG   PATHWAY: copr00020
Entry
copr00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Coprobacter secundus subsp. similis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
copr00020  Citrate cycle (TCA cycle)
copr00020

Module
copr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:copr00020]
copr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:copr00020]
copr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:copr00020]
Other DBs
GO: 0006099
Organism
Coprobacter secundus subsp. similis [GN:copr]
Gene
Cop2CBH44_06150  citrate synthase [KO:K01647] [EC:2.3.3.1]
Cop2CBH44_06130  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Cop2CBH44_06140  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
Cop2CBH44_09980  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Cop2CBH44_24260  MFS transporter [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Cop2CBH44_09990  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Cop2CBH44_24270  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Cop2CBH44_10000  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
Cop2CBH44_09970  ferredoxin [KO:K00176] [EC:1.2.7.3]
Cop2CBH44_23020  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Cop2CBH44_23010  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
Cop2CBH44_23030  fumarate reductase [KO:K00241]
Cop2CBH44_18600  fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
Cop2CBH44_13880  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Cop2CBH44_25150  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Cop2CBH44_31310  pckA_2; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
Cop2CBH44_23550  pckA_1; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
Cop2CBH44_15280  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
copr00010  Glycolysis / Gluconeogenesis
copr00053  Ascorbate and aldarate metabolism
copr00061  Fatty acid biosynthesis
copr00071  Fatty acid degradation
copr00190  Oxidative phosphorylation
copr00220  Arginine biosynthesis
copr00250  Alanine, aspartate and glutamate metabolism
copr00280  Valine, leucine and isoleucine degradation
copr00350  Tyrosine metabolism
copr00470  D-Amino acid metabolism
copr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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