KEGG   PATHWAY: csci00040
Entry
csci00040                   Pathway                                
Name
Pentose and glucuronate interconversions - Clostridium scindens
Class
Metabolism; Carbohydrate metabolism
Pathway map
csci00040  Pentose and glucuronate interconversions
csci00040

Organism
Clostridium scindens [GN:csci]
Gene
HDCHBGLK_00712  kduD_1; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [KO:K00065] [EC:1.1.1.127]
HDCHBGLK_00410  lyx_1; L-xylulose/3-keto-L-gulonate kinase [KO:K00880] [EC:2.7.1.53]
HDCHBGLK_00766  lyx_3; L-xylulose/3-keto-L-gulonate kinase [KO:K00880] [EC:2.7.1.53]
HDCHBGLK_00409  ulaE_1; L-ribulose-5-phosphate 3-epimerase UlaE [KO:K03079] [EC:5.1.3.22]
HDCHBGLK_00767  ulaE_2; L-ribulose-5-phosphate 3-epimerase UlaE [KO:K03079] [EC:5.1.3.22]
HDCHBGLK_00407  ulaF; L-ribulose-5-phosphate 4-epimerase UlaF [KO:K03077] [EC:5.1.3.4]
HDCHBGLK_00773  araD; L-ribulose-5-phosphate 4-epimerase AraD [KO:K03077] [EC:5.1.3.4]
HDCHBGLK_01850  rpe; Ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
HDCHBGLK_00677  xylB_2; Xylulose kinase [KO:K24707] [EC:2.7.1.16]
HDCHBGLK_00673  xylB_1; Xylulose kinase [KO:K00854] [EC:2.7.1.17]
HDCHBGLK_00681  xylB_3; Xylulose kinase [KO:K00854] [EC:2.7.1.17]
HDCHBGLK_00687  xylB_4; Xylulose kinase [KO:K00854] [EC:2.7.1.17]
HDCHBGLK_00721  xylB_5; Xylulose kinase [KO:K00854] [EC:2.7.1.17]
HDCHBGLK_00747  xylB_6; Xylulose kinase [KO:K00854] [EC:2.7.1.17]
HDCHBGLK_01678  xylB_9; Xylulose kinase [KO:K00854] [EC:2.7.1.17]
HDCHBGLK_00679  rhaB_1; L-Rhamnulokinase [KO:K00848] [EC:2.7.1.5]
HDCHBGLK_00771  rhaB_2; L-Rhamnulokinase [KO:K00848] [EC:2.7.1.5]
HDCHBGLK_00650  hypothetical protein [KO:K09988] [EC:5.3.1.15]
HDCHBGLK_02272  yjmD; putative zinc-type alcohol dehydrogenase-like protein YjmD [KO:K00008] [EC:1.1.1.14]
HDCHBGLK_00672  gatD; Galactitol-1-phosphate 5-dehydrogenase [KO:K00008] [EC:1.1.1.14]
HDCHBGLK_00695  gutB_1; Sorbitol dehydrogenase [KO:K00008] [EC:1.1.1.14]
HDCHBGLK_00843  gutB_2; Sorbitol dehydrogenase [KO:K00008] [EC:1.1.1.14]
HDCHBGLK_01676  gutB_3; Sorbitol dehydrogenase [KO:K00008] [EC:1.1.1.14]
HDCHBGLK_01967  fucI; L-fucose isomerase [KO:K01818] [EC:5.3.1.25 5.3.1.3]
HDCHBGLK_02240  fucA_4; L-fuculose phosphate aldolase [KO:K01628] [EC:4.1.2.17]
HDCHBGLK_00676  fucA_1; L-fuculose phosphate aldolase [KO:K01628] [EC:4.1.2.17]
HDCHBGLK_00751  fucA_2; L-fuculose phosphate aldolase [KO:K01628] [EC:4.1.2.17]
HDCHBGLK_00770  fucA_3; L-fuculose phosphate aldolase [KO:K01628] [EC:4.1.2.17]
Compound
C00022  Pyruvate
C00026  2-Oxoglutarate
C00029  UDP-glucose
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00116  Glycerol
C00167  UDP-glucuronate
C00181  D-Xylose
C00191  D-Glucuronate
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00216  D-Arabinose
C00231  D-Xylulose 5-phosphate
C00259  L-Arabinose
C00266  Glycolaldehyde
C00309  D-Ribulose
C00310  D-Xylulose
C00312  L-Xylulose
C00333  D-Galacturonate
C00379  Xylitol
C00433  2,5-Dioxopentanoate
C00470  Pectate
C00474  Ribitol
C00476  D-Lyxose
C00502  D-Xylonate
C00508  L-Ribulose
C00514  D-Mannonate
C00532  L-Arabitol
C00558  D-Tagaturonate
C00618  3-Dehydro-L-gulonate
C00714  Pectin
C00789  CDP-ribitol
C00800  L-Gulonate
C00817  D-Altronate
C00905  D-Fructuronate
C01068  D-Ribitol 5-phosphate
C01101  L-Ribulose 5-phosphate
C01508  L-Lyxose
C01904  D-Arabitol
C02266  D-Xylonolactone
C02273  Digalacturonate
C02426  L-Glyceraldehyde
C02753  D-Xylono-1,4-lactone
C03033  beta-D-Glucuronoside
C03291  L-Xylulose 5-phosphate
C03826  2-Dehydro-3-deoxy-D-xylonate
C04053  5-Dehydro-4-deoxy-D-glucuronate
C04349  (4S)-4,6-Dihydroxy-2,5-dioxohexanoate
C04575  (4R,5S)-4,5,6-Trihydroxy-2,3-dioxohexanoate
C05385  D-Glucuronate 1-phosphate
C05411  L-Xylonate
C05412  L-Lyxonate
C06118  4-(4-Deoxy-alpha-D-gluc-4-enuronosyl)-D-galacturonate
C06441  L-Xylulose 1-phosphate
C14899  3-Dehydro-L-gulonate 6-phosphate
C15930  L-Galactonate
C20680  2-Dehydro-3-deoxy-L-galactonate
C22337  D-Ribulose 1-phosphate
C22712  4-Deoxy-L-threo-hex-4-enopyranuronate
Reference
PMID:11741871
  Authors
Yew WS, Gerlt JA.
  Title
Utilization of L-ascorbate by Escherichia coli K-12: assignments of functions to products of the yjf-sga and yia-sgb operons.
  Journal
J Bacteriol 184:302-6 (2002)
DOI:10.1128/JB.184.1.302-306.2002
Reference
PMID:15697206
  Authors
Yew WS, Akana J, Wise EL, Rayment I, Gerlt JA
  Title
Evolution of enzymatic activities in the orotidine 5'-monophosphate decarboxylase suprafamily: enhancing the promiscuous D-arabino-hex-3-ulose 6-phosphate synthase reaction catalyzed by 3-keto-L-gulonate 6-phosphate decarboxylase.
  Journal
Biochemistry 44:1807-15 (2005)
DOI:10.1021/bi047815v
Reference
PMID:10572115
  Authors
Yasueda H, Kawahara Y, Sugimoto S.
  Title
Bacillus subtilis yckG and yckF encode two key enzymes of the ribulose monophosphate pathway used by methylotrophs, and yckH is required for their expression.
  Journal
J Bacteriol 181:7154-60 (1999)
DOI:10.1128/JB.181.23.7154-7160.1999
Reference
PMID:10913097
  Authors
Ibanez E, Gimenez R, Pedraza T, Baldoma L, Aguilar J, Badia J
  Title
Role of the yiaR and yiaS genes of Escherichia coli in metabolism of endogenously formed L-xylulose.
  Journal
J Bacteriol 182:4625-7 (2000)
DOI:10.1128/JB.182.16.4625-4627.2000
Reference
PMID:15901685
  Authors
Orita I, Yurimoto H, Hirai R, Kawarabayasi Y, Sakai Y, Kato N
  Title
The archaeon Pyrococcus horikoshii possesses a bifunctional enzyme for formaldehyde fixation via the ribulose monophosphate pathway.
  Journal
J Bacteriol 187:3636-42 (2005)
DOI:10.1128/JB.187.11.3636-3642.2005
Related
pathway
csci00010  Glycolysis / Gluconeogenesis
csci00020  Citrate cycle (TCA cycle)
csci00030  Pentose phosphate pathway
csci00052  Galactose metabolism
csci00053  Ascorbate and aldarate metabolism
csci00500  Starch and sucrose metabolism
csci00520  Amino sugar and nucleotide sugar metabolism
csci00561  Glycerolipid metabolism
csci00740  Riboflavin metabolism
KO pathway
ko00040   
LinkDB

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