KEGG   PATHWAY: cthi00020
Entry
cthi00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Caldimicrobium thiodismutans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cthi00020  Citrate cycle (TCA cycle)
cthi00020

Module
cthi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cthi00020]
cthi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cthi00020]
Other DBs
GO: 0006099
Organism
Caldimicrobium thiodismutans [GN:cthi]
Gene
THC_1672  histone-lysine N-methyltransferase [KO:K05942] [EC:2.3.3.3]
THC_0020  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
THC_1543  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
THC_1440  2-oxoacid ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
THC_1739  2-ketoisovalerate ferredoxin oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
THC_1439  2-oxoacid ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
THC_1740  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
THC_1741  2-oxoacid:ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
THC_1738  tungsten formylmethanofuran dehydrogenase [KO:K00176] [EC:1.2.7.3]
THC_1169  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
THC_1668  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
THC_0946  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
THC_0246  biotin attachment protein [KO:K01958] [EC:6.4.1.1]
THC_1801  acetyl-CoA carboxylase [KO:K01959] [EC:6.4.1.1]
THC_0010  2-ketoisovalerate ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
THC_0011  pyruvate synthase [KO:K00170] [EC:1.2.7.1]
THC_0008  pyruvate synthase [KO:K00172] [EC:1.2.7.1]
THC_0009  pyruvate ferredoxin oxidoreductase [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cthi00010  Glycolysis / Gluconeogenesis
cthi00053  Ascorbate and aldarate metabolism
cthi00061  Fatty acid biosynthesis
cthi00190  Oxidative phosphorylation
cthi00220  Arginine biosynthesis
cthi00250  Alanine, aspartate and glutamate metabolism
cthi00280  Valine, leucine and isoleucine degradation
cthi00350  Tyrosine metabolism
cthi00470  D-Amino acid metabolism
cthi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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