KEGG   PATHWAY: ctp00020
Entry
ctp00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Candida tropicalis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ctp00020  Citrate cycle (TCA cycle)
ctp00020

Module
ctp_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ctp00020]
ctp_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ctp00020]
ctp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ctp00020]
ctp_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ctp00020]
ctp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ctp00020]
Other DBs
GO: 0006099
Organism
Candida tropicalis [GN:ctp]
Gene
CTRG_00747  citrate synthase, mitochondrial precursor [KO:K01647] [EC:2.3.3.1]
CTRG_03051  aconitate hydratase, mitochondrial precursor [KO:K01681] [EC:4.2.1.3]
CTRG_00909  isocitrate dehydrogenase peroxisomal [KO:K00031] [EC:1.1.1.42]
CTRG_01521  isocitrate dehydrogenase, mitochondrial precursor [KO:K00031] [EC:1.1.1.42]
CTRG_01317  isocitrate dehydrogenase subunit 2, mitochondrial precursor [KO:K00030] [EC:1.1.1.41]
CTRG_03395  isocitrate dehydrogenase subunit 1, mitochondrial precursor [KO:K00030] [EC:1.1.1.41]
CTRG_04027  2-oxoglutarate dehydrogenase E1 component, mitochondrial precursor [KO:K00164] [EC:1.2.4.2]
CTRG_03072  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
CTRG_03071  dihydrolipoyl dehydrogenase, mitochondrial precursor [KO:K00382] [EC:1.8.1.4]
CTRG_04465  succinyl-CoA ligase alpha-chain, mitochondrial precursor [KO:K01899] [EC:6.2.1.4 6.2.1.5]
CTRG_00671  succinyl-CoA ligase beta-chain, mitochondrial precursor [KO:K01900] [EC:6.2.1.4 6.2.1.5]
CTRG_04515  succinate dehydrogenase flavoprotein subunit, mitochondrial precursor [KO:K00234] [EC:1.3.5.1]
CTRG_03795  succinate dehydrogenase flavoprotein subunit, mitochondrial precursor [KO:K00234] [EC:1.3.5.1]
CTRG_00535  succinate dehydrogenase iron-sulfur protein, mitochondrial precursor [KO:K00235] [EC:1.3.5.1]
CTRG_01263  succinate dehydrogenase cytochrome B subunit, mitochondrial precursor [KO:K00236]
CTRG_04772  hypothetical protein [KO:K00237]
CTRG_06134  hypothetical protein [KO:K00237]
CTRG_05589  fumarate hydratase, mitochondrial precursor [KO:K01679] [EC:4.2.1.2]
CTRG_01021  malate dehydrogenase, mitochondrial precursor [KO:K00026] [EC:1.1.1.37]
CTRG_00226  malate dehydrogenase, mitochondrial precursor [KO:K00026] [EC:1.1.1.37]
CTRG_02024  malate dehydrogenase, mitochondrial precursor [KO:K00026] [EC:1.1.1.37]
CTRG_00259  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CTRG_01062  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
CTRG_03732  pyruvate dehydrogenase E1 component alpha subunit, mitochondrial precursor [KO:K00161] [EC:1.2.4.1]
CTRG_05738  pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor [KO:K00162] [EC:1.2.4.1]
CTRG_05084  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial precursor [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ctp00010  Glycolysis / Gluconeogenesis
ctp00053  Ascorbate and aldarate metabolism
ctp00061  Fatty acid biosynthesis
ctp00062  Fatty acid elongation
ctp00071  Fatty acid degradation
ctp00190  Oxidative phosphorylation
ctp00220  Arginine biosynthesis
ctp00250  Alanine, aspartate and glutamate metabolism
ctp00280  Valine, leucine and isoleucine degradation
ctp00350  Tyrosine metabolism
ctp00470  D-Amino acid metabolism
ctp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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