KEGG   PATHWAY: cts00020
Entry
cts00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Chloroherpeton thalassium
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cts00020  Citrate cycle (TCA cycle)
cts00020

Module
cts_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cts00020]
cts_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cts00020]
cts_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cts00020]
cts_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cts00020]
cts_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cts00020]
Other DBs
GO: 0006099
Organism
Chloroherpeton thalassium [GN:cts]
Gene
Ctha_0613  citrate synthase I [KO:K01647] [EC:2.3.3.1]
Ctha_2552  ATP-citrate lyase/succinyl-CoA ligase [KO:K15230] [EC:2.3.3.8]
Ctha_2553  ATP-grasp domain protein [KO:K15231] [EC:2.3.3.8]
Ctha_2453  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Ctha_0632  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Ctha_2161  isocitrate dehydrogenase, NAD-dependent [KO:K00030] [EC:1.1.1.41]
Ctha_2202  catalytic domain of components of various dehydrogenase complexes [KO:K00658] [EC:2.3.1.61]
Ctha_2569  2-oxoglutarate dehydrogenase, E1 subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
Ctha_2180  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Ctha_1492  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Ctha_1491  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Ctha_2680  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Ctha_2267  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Ctha_0165  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Ctha_0456  succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Ctha_1260  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Ctha_0163  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Ctha_0164  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Ctha_0458  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
Ctha_0162  CoB--CoM heterodisulfide reductase [KO:K00241]
Ctha_0457  succinate dehydrogenase, membrane subunit, putative [KO:K00242]
Ctha_1855  fumarate lyase [KO:K01679] [EC:4.2.1.2]
Ctha_0098  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
Ctha_2637  Oxaloacetate decarboxylase [KO:K01958] [EC:6.4.1.1]
Ctha_1390  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Ctha_0743  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cts00010  Glycolysis / Gluconeogenesis
cts00053  Ascorbate and aldarate metabolism
cts00061  Fatty acid biosynthesis
cts00190  Oxidative phosphorylation
cts00220  Arginine biosynthesis
cts00250  Alanine, aspartate and glutamate metabolism
cts00280  Valine, leucine and isoleucine degradation
cts00350  Tyrosine metabolism
cts00470  D-Amino acid metabolism
cts00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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