KEGG   PATHWAY: dao00020
Entry
dao00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Desulfobacca acetoxidans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dao00020  Citrate cycle (TCA cycle)
dao00020

Module
dao_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:dao00020]
dao_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:dao00020]
dao_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dao00020]
Other DBs
GO: 0006099
Organism
Desulfobacca acetoxidans [GN:dao]
Gene
Desac_0563  putative cache sensor protein [KO:K05942] [EC:2.3.3.3]
Desac_1531  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Desac_1300  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Desac_2166  2-oxoacid:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Desac_1829  2-oxoglutarate synthase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Desac_2167  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Desac_2673  2-oxoglutarate synthase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Desac_2675  2-oxoglutarate synthase [KO:K00177] [EC:1.2.7.3]
Desac_1830  4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [KO:K00176] [EC:1.2.7.3]
Desac_1870  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Desac_1871  Succinyl-CoA ligase (ADP-forming) subunit beta [KO:K01903] [EC:6.2.1.5]
Desac_0860  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
Desac_0861  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K25995] [EC:1.3.5.1 7.1.1.12]
Desac_0859  succinate dehydrogenase/fumarate reductase, cytochrome b subunit [KO:K25996]
Desac_1679  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [KO:K01677] [EC:4.2.1.2]
Desac_1678  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01678] [EC:4.2.1.2]
Desac_0037  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Desac_1614  acetyl-CoA carboxylase, biotin carboxylase [KO:K01959] [EC:6.4.1.1]
Desac_2816  Pyruvate carboxylase [KO:K01960] [EC:6.4.1.1]
Desac_1615  Oxaloacetate decarboxylase [KO:K01960] [EC:6.4.1.1]
Desac_1987  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Desac_0253  pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
Desac_0252  Pyruvate dehydrogenase (acetyl-transferring) [KO:K00162] [EC:1.2.4.1]
Desac_2889  Dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Desac_1354  Pyruvate synthase [KO:K00169] [EC:1.2.7.1]
Desac_1353  Pyruvate synthase [KO:K00170] [EC:1.2.7.1]
Desac_1356  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Desac_1355  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Desac_0544  Pyruvate dehydrogenase (NADP(+))., 2-oxoglutarate synthase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dao00010  Glycolysis / Gluconeogenesis
dao00053  Ascorbate and aldarate metabolism
dao00061  Fatty acid biosynthesis
dao00071  Fatty acid degradation
dao00190  Oxidative phosphorylation
dao00220  Arginine biosynthesis
dao00250  Alanine, aspartate and glutamate metabolism
dao00280  Valine, leucine and isoleucine degradation
dao00350  Tyrosine metabolism
dao00470  D-Amino acid metabolism
dao00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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