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Entry
Name
ABC transporters - Dickeya dianthicola
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
BRITE hierarchy
Pathway map
Ortholog table
Other DBs
Organism
Dickeya dianthicola [GN:
ddq ]
Gene
DDI_1236 ABC-type nitrate/sulfonate/bicarbonat transport systems, periplasmic component [KO:K15553 ]
DDI_1312 Alkanesulfonates transport system permeas protein [KO:K15554 ]
DDI_1333 Alkanesulfonates transport system permeas protein [KO:K15554 ]
DDI_2447 Alkanesulfonates transport system permeas protein [KO:K15554 ]
DDI_1091 Molybdenum ABC transporter, periplasmi molybdenum-binding protein ModA [KO:K02020 ]
DDI_1092 Molybdenum transport system permease protein ModB [KO:K02018 ]
DDI_1088 Putative molybdenum transport ATP-bindin protein modF [KO:K05776 ]
DDI_3579 Thiamin ABC transporter, substrate-bindin component [KO:K02064 ]
DDI_3581 Thiamin ABC transporter, ATPase component Thiamine transport ATP-binding protein thiQ [KO:K02062 ] [EC:7.6.2.15 ]
DDI_1674 Putrescine ABC transporter putrescine-bindin protein PotF [KO:K11073 ]
DDI_1677 Putrescine transport system permease protein PotI [KO:K11074 ]
DDI_1676 Putrescine transport system permease protein PotH [KO:K11075 ]
DDI_3773 L-proline glycine betaine binding AB transporter protein ProX [KO:K02002 ]
DDI_3240 L-proline glycine betaine binding AB transporter protein ProX [KO:K02002 ]
DDI_3777 L-proline glycine betaine ABC transport syste permease protein ProW [KO:K02001 ]
DDI_3239 L-proline glycine betaine ABC transport syste permease protein ProW [KO:K02001 ]
DDI_2835 Maltose/maltodextrin transport ATP-bindin protein MalK [KO:K10111 ] [EC:7.5.2.-]
DDI_3497 Various polyols ABC transporter, ATP-bindin component [KO:K10111 ] [EC:7.5.2.-]
DDI_0667 Maltose maltodextrin transport ATP-bindin protein malK [KO:K10111 ] [EC:7.5.2.-]
DDI_0305 Glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K10111 ] [EC:7.5.2.-]
DDI_2834 Maltose/maltodextrin ABC transporter, substrat binding periplasmic protein MalE [KO:K15770 ]
DDI_2833 Maltose/maltodextrin ABC transporter, permeas protein MalF [KO:K15771 ]
DDI_2832 Maltose/maltodextrin ABC transporter, permeas protein MalG [KO:K15772 ]
DDI_0302 putative sugar ABC transporter substrate-binding protein, putative [KO:K10117 ]
DDI_3495 Ribose ABC transport system, permease protein RbsC [KO:K17243 ]
DDI_0058 putative ABC transporter, auxiliar component YrbC [KO:K07323 ]
DDI_0057 putative ABC transporter, periplasmi component YrbD [KO:K02067 ]
DDI_0055 putative ABC transporter, ATP-bindin protein YrbF [KO:K02065 ]
DDI_4222 Ribose ABC transport system, periplasmi ribose-binding protein RbsB [KO:K10439 ]
DDI_4223 Ribose ABC transport system, permease protein RbsC [KO:K10440 ]
DDI_1945 L-arabinose-binding periplasmic protein precursor AraF [KO:K10537 ]
DDI_3157 Putative sugar ABC transport system periplasmic binding protein YtfQ precursor [KO:K23508 ]
DDI_3160 Putative sugar ABC transport system, permeas protein YjfF [KO:K23509 ]
DDI_3159 Putative sugar ABC transport system, permeas protein YtfT [KO:K23509 ]
DDI_0971 Galactose/methyl galactoside ABC transpor system, D-galactose-binding periplasmic protein MglB [KO:K10540 ]
DDI_0969 Galactose/methyl galactoside ABC transpor system, permease protein MglC [KO:K10541 ]
DDI_4380 Xylose ABC transporter, periplasmi xylose-binding protein XylF [KO:K10543 ]
DDI_0213 Ribose ABC transport system, permease protein RbsC [KO:K17203 ]
DDI_0212 Ribose ABC transport system, ATP-bindin protein RbsA [KO:K17204 ]
DDI_4172 Maltose/maltodextrin ABC transporter, substrat binding periplasmic protein MalE [KO:K17237 ]
DDI_4170 ABC transporter, membrane spanning protein [sugar] [KO:K17238 ]
DDI_4169 ABC transporter, membrane spanning protein [sugars] [KO:K17239 ]
DDI_4090 Glycerol-3-phosphate ABC transporter periplasmic glycerol-3-phosphate-binding protein [KO:K05813 ]
DDI_0533 N-Acetyl-D-glucosamine ABC transport system permease protein [KO:K05814 ]
DDI_4089 Glycerol-3-phosphate ABC transporter, permeas protein UgpA [KO:K05814 ]
DDI_0532 N-Acetyl-D-glucosamine ABC transport system permease protein 2 [KO:K05815 ]
DDI_4088 Glycerol-3-phosphate ABC transporter, permeas protein UgpE [KO:K05815 ]
DDI_4272 Phosphate ABC transporter, periplasmi phosphate-binding protein PstS [KO:K02040 ]
DDI_0850 Phosphate ABC transporter, periplasmi phosphate-binding protein PstS [KO:K02040 ]
DDI_1258 Phosphonate ABC transporter phosphate-bindin periplasmic component [KO:K02044 ]
DDI_1259 Phosphonate ABC transporter permease protein phnE2 [KO:K02042 ]
DDI_1260 Phosphonate ABC transporter permease protein phnE1 [KO:K02042 ]
DDI_2655 Lysine-arginine-ornithine-binding periplasmi protein precursor [KO:K10013 ]
DDI_2732 Histidine ABC transporter, histidine-bindin periplasmic protein precursor HisJ [KO:K10014 ]
DDI_1546 Glutamine ABC transporter, periplasmi glutamine-binding protein [KO:K10036 ]
DDI_1681 Arginine ABC transporter, periplasmi arginine-binding protein ArtJ [KO:K09996 ]
DDI_1685 Arginine ABC transporter, periplasmi arginine-binding protein ArtI [KO:K09997 ]
DDI_1015 Glutamate Aspartate periplasmic binding protein precursor GltI [KO:K10001 ]
DDI_1013 Glutamate Aspartate transport system permeas protein GltK [KO:K10002 ]
DDI_1014 Glutamate Aspartate transport system permeas protein GltJ [KO:K10003 ]
DDI_2852 ABC-type amino acid transport/signa transduction systems, periplasmic component/domain [KO:K10018 ]
DDI_2850 ABC-type arginine/histidine transport system permease component [KO:K10019 ]
DDI_0004 Glutamate Aspartate periplasmic binding protein precursor GltI [KO:K09969 ]
DDI_0003 Glutamate Aspartate transport system permeas protein GltJ [KO:K09970 ]
DDI_0002 Glutamate Aspartate transport system permeas protein GltK [KO:K09971 ]
DDI_0006 ABC-type amino acid transport/signa transduction systems, periplasmic component/domain [KO:K02424 ]
DDI_3987 Arginine ABC transporter, periplasmi arginine-binding protein ArtJ [KO:K16961 ]
DDI_3994 Arginine ABC transporter, periplasmi arginine-binding protein ArtJ [KO:K16961 ]
DDI_3985 ABC-type polar amino acid transport system ATPase component [KO:K16963 ]
DDI_4105 High-affinity leucine-specific transpor system, periplasmic binding protein LivK [KO:K01999 ]
DDI_4104 High-affinity branched-chain amino aci transport system permease protein LivH [KO:K01997 ]
DDI_4103 Branched-chain amino acid transport syste permease protein LivM [KO:K01998 ]
DDI_4102 Branched-chain amino acid transport ATP-bindin protein LivG [KO:K01995 ]
DDI_4101 Branched-chain amino acid transport ATP-bindin protein LivF [KO:K01996 ]
DDI_1325 Methionine ABC transporter substrate-bindin protein [KO:K02073 ]
DDI_1657 Methionine ABC transporter substrate-bindin protein [KO:K02073 ]
DDI_3258 Methionine ABC transporter substrate-bindin protein [KO:K02073 ]
DDI_2377 Oligopeptide ABC transporter, periplasmi oligopeptide-binding protein OppA [KO:K15580 ]
DDI_1895 Oligopeptide ABC transporter, periplasmi oligopeptide-binding protein OppA [KO:K15580 ]
DDI_1896 Oligopeptide transport system permease protein OppB [KO:K15581 ]
DDI_1897 Oligopeptide transport system permease protein OppC [KO:K15582 ]
DDI_1898 Oligopeptide transport system permease protein OppB [KO:K15583 ]
DDI_4140 Dipeptide-binding ABC transporter, periplasmi substrate-binding component [KO:K12368 ]
DDI_1523 Dipeptide-binding ABC transporter, periplasmi substrate-binding component [KO:K12368 ]
DDI_2356 Peptide transport periplasmic protein sapA (T 3.A.1.5.5) [KO:K19226 ]
DDI_2359 Peptide transport system ATP-binding protein SapD [KO:K19229 ]
DDI_2360 Peptide transport system ATP-binding protein SapF [KO:K19230 ]
DDI_1407 Nickel ABC transporter, periplasmi nickel-binding protein NikA [KO:K15584 ]
DDI_4463 Dipeptide-binding ABC transporter, periplasmi substrate-binding component [KO:K13889 ]
DDI_1613 ABC transporter, periplasmic substrate-bindin protein [KO:K13893 ]
DDI_1612 Oligopeptide transport system permease protein OppB [KO:K13894 ]
DDI_1611 Oligopeptide transport system permease protein OppC [KO:K13895 ]
DDI_1610 Oligopeptide transport system permease protein OppB [KO:K13896 ]
DDI_2781 Ferric enterobactin-binding periplasmic protein FepB [KO:K23185 ]
DDI_2783 Ferric enterobactin transport system permeas protein FepD [KO:K23186 ]
DDI_2784 Ferric enterobactin transport system permeas protein FepG, ABC-type Fe3+-siderophore transport system, permease 2 component [KO:K23187 ]
DDI_3082 Vitamin B12 ABC transporter, B12-bindin component BtuF [KO:K06858 ]
DDI_2470 Vitamin B12 ABC transporter, permease componen BtuC [KO:K06073 ]
DDI_1828 Zinc ABC transporter, periplasmic-bindin protein ZnuA [KO:K09815 ]
DDI_1826 Zinc ABC transporter, inner membrane permeas protein ZnuB [KO:K09816 ]
DDI_1359 Manganese ABC transporter, periplasmic-bindin protein SitA [KO:K11604 ]
DDI_1357 Manganese ABC transporter, inner membran permease protein SitC [KO:K11605 ]
DDI_1356 Manganese ABC transporter, inner membran permease protein SitD [KO:K11606 ]
DDI_1358 Manganese ABC transporter, ATP-binding protein SitB [KO:K11607 ]
DDI_2473 Lipoprotein releasing system transmembran protein LolE [KO:K09808 ]
DDI_2475 Lipoprotein releasing system transmembran protein LolC [KO:K09808 ]
DDI_2474 Lipoprotein releasing system ATP-bindin protein LolD [KO:K09810 ] [EC:7.6.2.-]
DDI_4109 Cell division transporter, ATP-binding protein FtsE [KO:K09812 ]
DDI_0902 Multidrug resistance-like ATP-binding protein mdlB [KO:K18890 ]
DDI_1982 ABC-type protease exporter, ATP-bindin component PrtD/AprD [KO:K12536 ]
DDI_0633 Macrolide export ATP-binding/permease protein MacB [KO:K05685 ] [EC:7.6.2.-]
Compound
C00093 sn-Glycerol 3-phosphate
C01153 Orthophosphoric monoester
C01181 4-Trimethylammoniobutanoate
C01279 4-Amino-5-hydroxymethyl-2-methylpyrimidine
C03557 2-Aminoethylphosphonate
C03611 Galactose oligosaccharide
C03619 Methyl beta-D-galactoside
C04114 (E)-4-(Trimethylammonio)but-2-enoate
C06705 Capsular polysaccharide
C19872 N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570 alpha-1,5-L-Arabinobiose
C20571 alpha-1,5-L-Arabinotriose
C20572 alpha-1,5-L-Arabinotetraose
Reference
Authors
Tomii K, Kanehisa M.
Title
A comparative analysis of ABC transporters in complete microbial genomes.
Journal
Reference
Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
Journal
Reference
Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
Journal
Reference
Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
Journal
Reference
Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
Journal
Reference
Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
Journal
Reference
Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
Journal
Reference
Authors
Richard-Fogal CL, Frawley ER, Kranz RG
Title
Topology and function of CcmD in cytochrome c maturation.
Journal
Reference
Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
Journal
Reference
Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
Journal
Reference
Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
Journal
Reference
Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
Journal
KO pathway
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