KEGG   PATHWAY: dfd00010
Entry
dfd00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Desulfurococcus amylolyticus DSM 16532
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dfd00010  Glycolysis / Gluconeogenesis
dfd00010

Module
dfd_M00002  Glycolysis, core module involving three-carbon compounds [PATH:dfd00010]
dfd_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:dfd00010]
dfd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dfd00010]
Other DBs
GO: 0006096 0006094
Organism
Desulfurococcus amylolyticus DSM 16532 [GN:dfd]
Gene
Desfe_0578  ROK family protein [KO:K25026] [EC:2.7.1.2]
Desfe_1128  bifunctional phosphoglucose/phosphomannose isomerase [KO:K15916] [EC:5.3.1.9 5.3.1.8]
Desfe_0718  Fructose-bisphosphate aldolase [KO:K11645] [EC:4.1.2.13]
Desfe_1349  archaeal fructose 1,6-bisphosphatase [KO:K01622] [EC:4.1.2.13 3.1.3.11]
Desfe_1348  triosephosphate isomerase [KO:K01803] [EC:5.3.1.1]
Desfe_0262  glyceraldehyde 3-phosphate dehydrogenase (NAD(P)+) [KO:K00150] [EC:1.2.1.59]
Desfe_0261  phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
Desfe_0416  phosphonopyruvate decarboxylase-related protein [KO:K15635] [EC:5.4.2.12]
Desfe_0063  enolase [KO:K01689] [EC:4.2.1.11]
Desfe_1347  pyruvate kinase [KO:K00873] [EC:2.7.1.40]
Desfe_0879  phosphoenolpyruvate synthase [KO:K01007] [EC:2.7.9.2]
Desfe_0667  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Desfe_0503  pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
Desfe_1298  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Desfe_1299  thiamine pyrophosphate TPP-binding domain-containing protein [KO:K00170] [EC:1.2.7.1]
Desfe_0502  thiamine pyrophosphate TPP-binding domain-containing protein [KO:K00170] [EC:1.2.7.1]
Desfe_0505  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Desfe_1296  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Desfe_0504  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Desfe_1297  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Desfe_0499  2-oxoglutarate ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Desfe_0475  2-oxoglutarate synthase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Desfe_0498  2-oxoglutarate ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Desfe_0474  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Desfe_1240  zinc-binding alcohol dehydrogenase family protein [KO:K13953] [EC:1.1.1.1]
Desfe_0977  acetyl coenzyme A synthetase (ADP forming), alpha domain protein [KO:K01905] [EC:6.2.1.13]
Desfe_1051  CoA-binding domain protein [KO:K01905] [EC:6.2.1.13]
Desfe_1050  ATP-grasp domain protein [KO:K22224] [EC:6.2.1.13]
Desfe_0782  ATP-grasp domain protein [KO:K22224] [EC:6.2.1.13]
Desfe_0111  phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I [KO:K15778] [EC:5.4.2.8 5.4.2.2]
Desfe_0188  phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I [KO:K15778] [EC:5.4.2.8 5.4.2.2]
Desfe_0557  Aldehyde ferredoxin oxidoreductase [KO:K11389] [EC:1.2.7.6]
Desfe_0067  Aldehyde Dehydrogenase [KO:K18978] [EC:1.2.1.90]
Desfe_0003  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dfd00020  Citrate cycle (TCA cycle)
dfd00030  Pentose phosphate pathway
dfd00500  Starch and sucrose metabolism
dfd00620  Pyruvate metabolism
dfd00640  Propanoate metabolism
dfd00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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