PATHWAY: dfn00470
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Entry
dfn00470 Pathway
Name
D-Amino acid metabolism - Dickeya fangzhongdai DSM 101947
Class
Metabolism; Metabolism of other amino acids
BRITE hierarchy
Pathway map
dfn00470
D-Amino acid metabolism
Ortholog table
Other DBs
GO:
0046416
Organism
Dickeya fangzhongdai DSM 101947 [GN:
dfn
]
Gene
CVE23_18250
alr; alanine racemase [KO:
K01775
] [EC:
5.1.1.1
]
CVE23_07620
D-amino-acid transaminase [KO:
K00824
] [EC:
2.6.1.21
]
CVE23_15250
D-amino acid aminotransferase [KO:
K00824
] [EC:
2.6.1.21
]
CVE23_04180
D-alanine--D-alanine ligase [KO:
K01921
] [EC:
6.3.2.4
]
CVE23_17240
D-alanine--poly(phosphoribitol) ligase [KO:
K03367
] [EC:
6.1.1.13
]
CVE23_00565
alanine-phosphoribitol ligase [KO:
K03367
] [EC:
6.1.1.13
]
CVE23_00570
alanine-phosphoribitol ligase [KO:
K03367
] [EC:
6.1.1.13
]
CVE23_17235
acyl carrier protein [KO:
K14188
] [EC:
6.1.1.13
]
CVE23_06505
aspartate/glutamate racemase family protein [KO:
K25316
] [EC:
5.1.1.10
]
CVE23_21190
glutamate racemase [KO:
K01776
] [EC:
5.1.1.3
]
CVE23_18865
UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [KO:
K01925
] [EC:
6.3.2.9
]
CVE23_00760
DUF1611 domain-containing protein [KO:
K26272
] [EC:
2.3.1.312
]
CVE23_07630
DUF1611 domain-containing protein [KO:
K26272
] [EC:
2.3.1.312
]
CVE23_07625
dipeptide epimerase [KO:
K19802
] [EC:
5.1.1.20
5.1.1.25
]
CVE23_00755
L-Ala-D/L-Glu epimerase [KO:
K19802
] [EC:
5.1.1.20
5.1.1.25
]
CVE23_08065
aspartate/glutamate racemase family protein [KO:
K01779
] [EC:
5.1.1.13
]
CVE23_08240
aspartate racemase [KO:
K01779
] [EC:
5.1.1.13
]
CVE23_13330
hypothetical protein [KO:
K01779
] [EC:
5.1.1.13
]
CVE23_21960
D-serine ammonia-lyase [KO:
K01753
] [EC:
4.3.1.18
]
CVE23_20875
diaminopimelate epimerase [KO:
K01778
] [EC:
5.1.1.7
]
CVE23_08410
diaminopimelate decarboxylase [KO:
K01586
] [EC:
4.1.1.20
]
CVE23_00590
lysA; diaminopimelate decarboxylase [KO:
K01586
] [EC:
4.1.1.20
]
CVE23_18170
diaminopimelate decarboxylase [KO:
K01586
] [EC:
4.1.1.20
]
CVE23_11750
D-amino acid dehydrogenase small subunit [KO:
K00285
] [EC:
1.4.5.1
]
Compound
C00022
Pyruvate
C00025
L-Glutamate
C00026
2-Oxoglutarate
C00036
Oxaloacetate
C00037
Glycine
C00041
L-Alanine
C00047
L-Lysine
C00049
L-Aspartate
C00062
L-Arginine
C00064
L-Glutamine
C00065
L-Serine
C00073
L-Methionine
C00077
L-Ornithine
C00079
L-Phenylalanine
C00084
Acetaldehyde
C00097
L-Cysteine
C00133
D-Alanine
C00134
Putrescine
C00135
L-Histidine
C00148
L-Proline
C00166
Phenylpyruvate
C00188
L-Threonine
C00217
D-Glutamate
C00402
D-Aspartate
C00431
5-Aminopentanoate
C00433
2,5-Dioxopentanoate
C00515
D-Ornithine
C00624
N-Acetyl-L-glutamate
C00666
LL-2,6-Diaminoheptanedioate
C00680
meso-2,6-Diaminoheptanedioate
C00692
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
C00739
D-Lysine
C00740
D-Serine
C00763
D-Proline
C00792
D-Arginine
C00793
D-Cysteine
C00819
D-Glutamine
C00820
D-Threonine
C00855
D-Methionine
C00993
D-Alanyl-D-alanine
C01110
5-Amino-2-oxopentanoic acid
C01157
Hydroxyproline
C01180
4-Methylthio-2-oxobutanoic acid
C01667
Bacitracin
C01672
Cadaverine
C01726
D-Lombricine
C02237
5-Oxo-D-proline
C02265
D-Phenylalanine
C02855
N-Phospho-D-lombricine
C03239
6-Amino-2-oxohexanoate
C03341
2-Amino-4-oxopentanoic acid
C03440
cis-4-Hydroxy-D-proline
C03564
1-Pyrroline-2-carboxylate
C03771
5-Guanidino-2-oxopentanoate
C03933
5-D-Glutamyl-D-glutamyl-peptide
C03943
(2R,4S)-2,4-Diaminopentanoate
C04260
O-D-Alanyl-poly(ribitol phosphate)
C04282
1-Pyrroline-4-hydroxy-2-carboxylate
C04457
D-Alanyl-alanyl-poly(glycerolphosphate)
C05161
(2R,5S)-2,5-Diaminohexanoate
C05620
N-Acetyl-D-phenylalanine
C05825
2-Amino-5-oxohexanoate
C05939
Linatine
C05941
2-Oxo-4-hydroxy-5-aminovalerate
C05942
Pyrrole-2-carboxylate
C06419
D-Histidine
C22024
Staphylopine
C22025
(2S)-2-Amino-4-{[(1R)-1-carboxy-2-(1H-imidazol-4-yl)ethyl]amino}butanoate
C22611
N-Acetyl-D-glutamate
Reference
PMID:
33788945
Authors
Miyamoto T, Homma H
Title
D-Amino acid metabolism in bacteria.
Journal
J Biochem 170:5-13 (2021)
DOI:
10.1093/jb/mvab043
Reference
PMID:
27230378
Authors
Ghssein G, Brutesco C, Ouerdane L, Fojcik C, Izaute A, Wang S, Hajjar C, Lobinski R, Lemaire D, Richaud P, Voulhoux R, Espaillat A, Cava F, Pignol D, Borezee-Durant E, Arnoux P
Title
Biosynthesis of a broad-spectrum nicotianamine-like metallophore in Staphylococcus aureus.
Journal
Science 352:1105-9 (2016)
DOI:
10.1126/science.aaf1018
Related
pathway
dfn00010
Glycolysis / Gluconeogenesis
dfn00020
Citrate cycle (TCA cycle)
dfn00250
Alanine, aspartate and glutamate metabolism
dfn00260
Glycine, serine and threonine metabolism
dfn00270
Cysteine and methionine metabolism
dfn00300
Lysine biosynthesis
dfn00310
Lysine degradation
dfn00330
Arginine and proline metabolism
dfn00340
Histidine metabolism
dfn00360
Phenylalanine metabolism
dfn00550
Peptidoglycan biosynthesis
dfn00620
Pyruvate metabolism
KO pathway
ko00470
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