KEGG   PATHWAY: dgo00030
Entry
dgo00030                    Pathway                                
Name
Pentose phosphate pathway - Deinococcus gobiensis
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dgo00030  Pentose phosphate pathway
dgo00030

Module
dgo_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:dgo00030]
dgo_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:dgo00030]
Other DBs
GO: 0006098
Organism
Deinococcus gobiensis [GN:dgo]
Gene
DGo_CA2178  pgi; Glucose-6-phosphate isomerase 2 [KO:K01810] [EC:5.3.1.9]
DGo_CA0458  Glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
DGo_PA0121  zwf1; Glucose-6-phosphate 1-dehydrogenase Zwf1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
DGo_CA0457  gnd; 6-phosphogluconate dehydrogenase related protein [KO:K00033] [EC:1.1.1.44 1.1.1.343]
DGo_CA1777  pgd; 6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
DGo_CA1667  putative ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
DGo_PA0355  tktB; transketolase [KO:K00615] [EC:2.2.1.1]
DGo_PA0356  tktA; Transketolase central region [KO:K00615] [EC:2.2.1.1]
DGo_CA2943  tkt; Transketolase [KO:K00615] [EC:2.2.1.1]
DGo_CA1565  Transaldolase, putative [KO:K00616] [EC:2.2.1.2]
DGo_CA1365  rpiA; Ribose-5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
DGo_CA1406  deoC; Deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
DGo_CA0715  rbsK; ribokinase isoform 2 [KO:K00852] [EC:2.7.1.15]
DGo_CA1212  pfkB; Fructokinase RbsK [KO:K00852] [EC:2.7.1.15]
DGo_PA0148  Ribokinase [KO:K00852] [EC:2.7.1.15]
DGo_CA0936  deoB; Phosphopentomutase [KO:K01839] [EC:5.4.2.7]
DGo_CA2598  Phosphoglucomutase, alpha-D-glucose phosphate-specific [KO:K01835] [EC:5.4.2.2]
DGo_CA0463  putative ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
DGo_CA0198  Gluconolactonase, putative [KO:K01053] [EC:3.1.1.17]
DGo_PB0075  Gluconate 2-dehydrogenase [KO:K06151] [EC:1.1.99.3]
DGo_PB0074  Gluconate 2-dehydrogenase [KO:K06152] [EC:1.1.99.3]
DGo_CA1664  gntK; thermoresistant gluconokinase [KO:K00851] [EC:2.7.1.12]
DGo_CA1302  Hydroxypyruvate reductase TtuD [KO:K11529] [EC:2.7.1.165]
DGo_CA0429  fba; Fructose-1,6-bisphosphate aldolase, class II [KO:K01624] [EC:4.1.2.13]
DGo_CA2599  glpX; putative Fructose-bisphosphatase [KO:K02446] [EC:3.1.3.11]
DGo_CA0828  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
dgo00010  Glycolysis / Gluconeogenesis
dgo00040  Pentose and glucuronate interconversions
dgo00052  Galactose metabolism
dgo00230  Purine metabolism
dgo00240  Pyrimidine metabolism
dgo00340  Histidine metabolism
dgo00630  Glyoxylate and dicarboxylate metabolism
dgo00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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