KEGG   PATHWAY: dli00010
Entry
dli00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Desulfonema limicola
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dli00010  Glycolysis / Gluconeogenesis
dli00010

Module
dli_M00002  Glycolysis, core module involving three-carbon compounds [PATH:dli00010]
dli_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dli00010]
Other DBs
GO: 0006096 0006094
Organism
Desulfonema limicola [GN:dli]
Gene
dnl_18020  pgi; Glucose-6-phosphate isomerase 1 [KO:K01810] [EC:5.3.1.9]
dnl_12700  pfkA; ATP-dependent 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
dnl_58180  Phosphofructokinase [KO:K00895] [EC:2.7.1.90]
dnl_21600  Ketose-bisphosphate aldolase family protein [KO:K01624] [EC:4.1.2.13]
dnl_08520  tpiA1; Triosephosphate isomerase [KO:K01803] [EC:5.3.1.1]
dnl_08510  gap; Glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
dnl_49410  gapB; Glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
dnl_51840  pgk; Phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
dnl_18990  gpmI; Phosphoglycerate mutase [KO:K15633] [EC:5.4.2.12]
dnl_40690  eno; Enolase [KO:K01689] [EC:4.2.1.11]
dnl_24940  pyk; Pyruvate kinase [KO:K00873] [EC:2.7.1.40]
dnl_29870  ppdK; Pyruvate, phosphate dikinase [KO:K01006] [EC:2.7.9.1]
dnl_49400  Pyruvate phosphate dikinase, PEP/pyruvate-binding [KO:K01006] [EC:2.7.9.1]
dnl_19180  PEP/pyruvate binding domain-containing protein [KO:K01007] [EC:2.7.9.2]
dnl_08190  lpdA; Dihydrolipoyl dehydrogenase (E3 component of 2-oxoglutarate dehydrogenase complex) [KO:K00382] [EC:1.8.1.4]
dnl_44030  FAD-dependent pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
dnl_19250  porA; Pyruvate synthase, subunit alpha [KO:K00169] [EC:1.2.7.1]
dnl_21760  porC; Pyruvate synthase subunit [KO:K00172] [EC:1.2.7.1]
dnl_28500  por; Pyruvate:ferredoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
dnl_55100  korA4; 2-oxoglutarate synthase, subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
dnl_14120  korA1; 2-oxoglutarate synthase, subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
dnl_24330  korA2; 2-oxoglutarate synthase, subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
dnl_44340  korA3; 2-oxoglutarate synthase, subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
dnl_55090  korB4; 2-oxoglutarate synthase, subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
dnl_14110  korB1; 2-oxoglutarate synthase, subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
dnl_24340  korB2; 2-oxoglutarate synthase, subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
dnl_44350  korB3; 2-oxoglutarate synthase, subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
dnl_60400  AMP-binding enzyme [KO:K01895] [EC:6.2.1.1]
dnl_60430  acsA3; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
dnl_27410  acsA1; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
dnl_23940  CoA-binding domain-containing protein [KO:K22224] [EC:6.2.1.13]
dnl_23950  CoA-binding domain-containing protein [KO:K24012] [EC:6.2.1.13]
dnl_32150  CoA-binding domain-containing protein [KO:K24012] [EC:6.2.1.13]
dnl_35830  Acetyl-CoA hydrolase/transferase [KO:K24012] [EC:6.2.1.13]
dnl_39670  pgm; Phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
dnl_17050  algC; Phosphomannomutase/phosphoglucomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
dnl_02690  pckA; Phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dli00020  Citrate cycle (TCA cycle)
dli00030  Pentose phosphate pathway
dli00500  Starch and sucrose metabolism
dli00620  Pyruvate metabolism
dli00640  Propanoate metabolism
dli00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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