KEGG   PATHWAY: dlm00020
Entry
dlm00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Desulfofustis limnaeus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dlm00020  Citrate cycle (TCA cycle)
dlm00020

Module
dlm_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:dlm00020]
dlm_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:dlm00020]
dlm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dlm00020]
Other DBs
GO: 0006099
Organism
Desulfofustis limnaeus [GN:dlm]
Gene
DPPLL_04620  gltA_1; citrate synthase [KO:K01647] [EC:2.3.3.1]
DPPLL_08800  citZ; citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
DPPLL_26460  gltA_2; citrate synthase [KO:K01647] [EC:2.3.3.1]
DPPLL_22930  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
DPPLL_11560  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DPPLL_26150  lpd; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DPPLL_15700  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DPPLL_33600  ferredoxin oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DPPLL_15710  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DPPLL_33610  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DPPLL_15720  korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
DPPLL_15690  hypothetical protein [KO:K00176] [EC:1.2.7.3]
DPPLL_22660  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
DPPLL_38350  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
DPPLL_22680  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
DPPLL_38360  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
DPPLL_15360  sdhA_1; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DPPLL_15650  sdhA_2; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DPPLL_15370  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DPPLL_15640  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
DPPLL_15660  succinate dehydrogenase [KO:K00241]
DPPLL_11820  fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
DPPLL_11620  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
DPPLL_24640  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DPPLL_34200  pycB; biotin attachment protein [KO:K01960] [EC:6.4.1.1]
DPPLL_38300  hypothetical protein [KO:K01960] [EC:6.4.1.1]
DPPLL_04670  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
DPPLL_11580  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
DPPLL_26180  bkdA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
DPPLL_32820  pdhA; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
DPPLL_26170  bkdB; 2-oxoisovalerate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
DPPLL_32810  acoB; pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
DPPLL_11570  pdhB; acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
DPPLL_26160  dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
DPPLL_32800  acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
DPPLL_27240  hypothetical protein [KO:K00171] [EC:1.2.7.1]
DPPLL_22600  poR; pyruvate synthase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dlm00010  Glycolysis / Gluconeogenesis
dlm00053  Ascorbate and aldarate metabolism
dlm00061  Fatty acid biosynthesis
dlm00071  Fatty acid degradation
dlm00190  Oxidative phosphorylation
dlm00220  Arginine biosynthesis
dlm00250  Alanine, aspartate and glutamate metabolism
dlm00280  Valine, leucine and isoleucine degradation
dlm00350  Tyrosine metabolism
dlm00470  D-Amino acid metabolism
dlm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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