KEGG   PATHWAY: dmm00010
Entry
dmm00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Desulfonema magnum
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dmm00010  Glycolysis / Gluconeogenesis
dmm00010

Module
dmm_M00002  Glycolysis, core module involving three-carbon compounds [PATH:dmm00010]
dmm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dmm00010]
Other DBs
GO: 0006096 0006094
Organism
Desulfonema magnum [GN:dmm]
Gene
dnm_052480  pgi; Glucose-6-phosphate isomerase 1 [KO:K01810] [EC:5.3.1.9]
dnm_076280  pfkA; ATP-dependent 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
dnm_079890  Phosphofructokinase [KO:K00895] [EC:2.7.1.90]
dnm_063300  Ketose-bisphosphate aldolase family protein [KO:K01624] [EC:4.1.2.13]
dnm_037710  aroA2; 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [KO:K16306] [EC:4.1.2.13 2.2.1.10]
dnm_078980  aroA'; 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [KO:K16306] [EC:4.1.2.13 2.2.1.10]
dnm_023020  tpiA1; Triosephosphate isomerase [KO:K01803] [EC:5.3.1.1]
dnm_030900  tpiA2; Triosephosphate isomerase [KO:K01803] [EC:5.3.1.1]
dnm_024810  gap; Glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
dnm_092270  gapB; Glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
dnm_003590  pgk; Phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
dnm_071260  gpmI; Phosphoglycerate mutase [KO:K15633] [EC:5.4.2.12]
dnm_070630  apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [KO:K15635] [EC:5.4.2.12]
dnm_014920  Enolase [KO:K01689] [EC:4.2.1.11]
dnm_064270  pyk; Pyruvate kinase [KO:K00873] [EC:2.7.1.40]
dnm_072800  ppdK; Pyruvate, phosphate dikinase [KO:K01006] [EC:2.7.9.1]
dnm_092260  Pyruvate phosphate dikinase, PEP/pyruvate-binding [KO:K01006] [EC:2.7.9.1]
dnm_035360  lpdA; Dihydrolipoyl dehydrogenase (E3 component of 2-oxoglutarate dehydrogenase complex) [KO:K00382] [EC:1.8.1.4]
dnm_064090  ipdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
dnm_022420  porA; Pyruvate synthase, subunit alpha [KO:K00169] [EC:1.2.7.1]
dnm_022440  porC; Pyruvate synthase subunit [KO:K00172] [EC:1.2.7.1]
dnm_042800  por1; Pyruvate:ferredoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
dnm_078040  por2; Pyruvate:ferredoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
dnm_032550  2-oxoglutarate synthase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
dnm_058640  korA1; 2-oxoglutarate synthase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
dnm_069410  korA2; 2-oxoglutarate synthase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
dnm_032540  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
dnm_058650  korB1; 2-oxoglutarate synthase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
dnm_069400  korB2; 2-oxoglutarate synthase subunit KorN [KO:K00175] [EC:1.2.7.3 1.2.7.11]
dnm_090160  Alcohol dehydrogenase [KO:K00001] [EC:1.1.1.1]
dnm_026500  acsA1; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
dnm_085720  acsA3; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
dnm_085800  AMP-binding enzyme [KO:K01895] [EC:6.2.1.1]
dnm_025880  CoA-binding domain-containing protein [KO:K24012] [EC:6.2.1.13]
dnm_078120  CoA-binding domain-containing protein [KO:K24012] [EC:6.2.1.13]
dnm_045380  algC; Phosphomannomutase/phosphoglucomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
dnm_061870  pckG; Phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dmm00020  Citrate cycle (TCA cycle)
dmm00030  Pentose phosphate pathway
dmm00500  Starch and sucrose metabolism
dmm00620  Pyruvate metabolism
dmm00640  Propanoate metabolism
dmm00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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