KEGG   PATHWAY: dmy00020
Entry
dmy00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Dehalococcoides mccartyi CG4
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dmy00020  Citrate cycle (TCA cycle)
dmy00020

Module
dmy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dmy00020]
Other DBs
GO: 0006099
Organism
Dehalococcoides mccartyi CG4 [GN:dmy]
Gene
X793_07435  homocitrate synthase [KO:K05942] [EC:2.3.3.3]
X793_01930  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
X793_01945  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
X793_01950  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
X793_01935  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
X793_00630  biotin carboxylase [KO:K01959] [EC:6.4.1.1]
X793_00625  pyruvate carboxylase [KO:K01960] [EC:6.4.1.1]
X793_03105  porA; 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
X793_03110  pyruvate ferredoxin oxidoreductase subunit beta [KO:K00170] [EC:1.2.7.1]
X793_03095  pyruvate ferredoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
X793_03100  pyruvic-ferredoxin oxidoreductase subunit delta [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dmy00010  Glycolysis / Gluconeogenesis
dmy00061  Fatty acid biosynthesis
dmy00190  Oxidative phosphorylation
dmy00220  Arginine biosynthesis
dmy00250  Alanine, aspartate and glutamate metabolism
dmy00280  Valine, leucine and isoleucine degradation
dmy00470  D-Amino acid metabolism
dmy00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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