KEGG   PATHWAY: dmz00020
Entry
dmz00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Dehalococcoides mccartyi CG5
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dmz00020  Citrate cycle (TCA cycle)
dmz00020

Module
dmz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dmz00020]
Other DBs
GO: 0006099
Organism
Dehalococcoides mccartyi CG5 [GN:dmz]
Gene
X794_07330  homocitrate synthase [KO:K05942] [EC:2.3.3.3]
X794_01675  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
X794_01690  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
X794_01695  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
X794_01680  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
X794_00560  biotin carboxylase [KO:K01959] [EC:6.4.1.1]
X794_00555  pyruvate carboxylase [KO:K01960] [EC:6.4.1.1]
X794_02850  porA; 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
X794_02855  pyruvate ferredoxin oxidoreductase subunit beta [KO:K00170] [EC:1.2.7.1]
X794_02840  pyruvate ferredoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
X794_02845  pyruvic-ferredoxin oxidoreductase subunit delta [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dmz00010  Glycolysis / Gluconeogenesis
dmz00061  Fatty acid biosynthesis
dmz00190  Oxidative phosphorylation
dmz00220  Arginine biosynthesis
dmz00250  Alanine, aspartate and glutamate metabolism
dmz00280  Valine, leucine and isoleucine degradation
dmz00470  D-Amino acid metabolism
dmz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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