KEGG   PATHWAY: dse00020
Entry
dse00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Drosophila sechellia
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dse00020  Citrate cycle (TCA cycle)
dse00020

Module
dse_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:dse00020]
dse_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:dse00020]
dse_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:dse00020]
dse_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:dse00020]
dse_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dse00020]
Other DBs
GO: 0006099
Organism
Drosophila sechellia [GN:dse]
Gene
6612276  probable citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
6606732  probable citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
6609355  ATP-citrate synthase isoform X3 [KO:K01648] [EC:2.3.3.8]
6618254  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
6606885  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
6606951  cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
6607484  cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
6604868  isocitrate dehydrogenase [NADP] cytoplasmic isoform X2 [KO:K00031] [EC:1.1.1.42]
6615000  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
6616957  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X2 [KO:K00030] [EC:1.1.1.41]
116800930  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
6607364  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
6610352  2-oxoglutarate dehydrogenase-like, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
6606038  2-oxoglutarate dehydrogenase-like, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
6606842  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
6606140  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
6610664  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
6610885  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
6607182  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X3 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
6609931  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
6614931  succinate dehydrogenase [ubiquinone] iron-sulfur subunit [KO:K00235] [EC:1.3.5.1]
6607896  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
6606868  succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
6607622  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
6612240  probable fumarate hydratase, mitochondrial isoform X2 [KO:K01679] [EC:4.2.1.2]
6605270  probable fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
6616638  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
6605515  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
6621152  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
6609808  phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
6609809  phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
6612473  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
6612474  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
6612652  pyruvate dehydrogenase E1 component subunit beta, mitochondrial isoform X1 [KO:K00162] [EC:1.2.4.1]
6611530  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dse00010  Glycolysis / Gluconeogenesis
dse00053  Ascorbate and aldarate metabolism
dse00061  Fatty acid biosynthesis
dse00062  Fatty acid elongation
dse00071  Fatty acid degradation
dse00190  Oxidative phosphorylation
dse00220  Arginine biosynthesis
dse00250  Alanine, aspartate and glutamate metabolism
dse00280  Valine, leucine and isoleucine degradation
dse00350  Tyrosine metabolism
dse00470  D-Amino acid metabolism
dse00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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