KEGG   PATHWAY: dvi00020
Entry
dvi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Drosophila virilis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dvi00020  Citrate cycle (TCA cycle)
dvi00020

Module
dvi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:dvi00020]
dvi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:dvi00020]
dvi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:dvi00020]
dvi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:dvi00020]
dvi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dvi00020]
Other DBs
GO: 0006099
Organism
Drosophila virilis [GN:dvi]
Gene
6633238  probable citrate synthase, mitochondrial isoform X3 [KO:K01647] [EC:2.3.3.1]
6627274  ATP-citrate synthase isoform X2 [KO:K01648] [EC:2.3.3.8]
6627470  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
6629407  cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
6630322  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
6623482  isocitrate dehydrogenase [NADP] cytoplasmic isoform X1 [KO:K00031] [EC:1.1.1.42]
6627213  isocitrate dehydrogenase [NAD] subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
6631084  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
6632982  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X2 [KO:K00030] [EC:1.1.1.41]
6634673  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
6623460  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
6624668  2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
6622753  2-oxoglutarate dehydrogenase-like, mitochondrial isoform X2 [KO:K00164] [EC:1.2.4.2]
6630414  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
6630597  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
6624439  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
6624548  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
6630553  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X3 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
6623924  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
6625273  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
6625717  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
6630263  succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
6630781  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial isoform X1 [KO:K00237]
6633555  probable fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
6623097  probable fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
6630367  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
6626118  pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
6626119  pyruvate carboxylase, mitochondrial isoform X2 [KO:K01958] [EC:6.4.1.1]
6624794  phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
6624795  phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
6631721  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
6627923  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
6631722  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
6630477  pyruvate dehydrogenase E1 component subunit beta, mitochondrial isoform X1 [KO:K00162] [EC:1.2.4.1]
6628476  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dvi00010  Glycolysis / Gluconeogenesis
dvi00053  Ascorbate and aldarate metabolism
dvi00061  Fatty acid biosynthesis
dvi00062  Fatty acid elongation
dvi00071  Fatty acid degradation
dvi00190  Oxidative phosphorylation
dvi00220  Arginine biosynthesis
dvi00250  Alanine, aspartate and glutamate metabolism
dvi00280  Valine, leucine and isoleucine degradation
dvi00350  Tyrosine metabolism
dvi00470  D-Amino acid metabolism
dvi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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