KEGG   PATHWAY: dzo00630
Entry
dzo00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Duganella zoogloeoides
Class
Metabolism; Carbohydrate metabolism
Pathway map
dzo00630  Glyoxylate and dicarboxylate metabolism
dzo00630

Module
dzo_M00012  Glyoxylate cycle [PATH:dzo00630]
dzo_M00621  Glycine cleavage system [PATH:dzo00630]
Other DBs
GO: 0046487 0043648
Organism
Duganella zoogloeoides [GN:dzo]
Gene
SR858_16945  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
SR858_20795  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
SR858_10950  aceB; malate synthase A [KO:K01638] [EC:2.3.3.9]
SR858_18600  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SR858_18565  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
SR858_13895  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
SR858_18615  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
SR858_16485  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
SR858_25730  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
SR858_26775  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
SR858_25725  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
SR858_02675  FAD-linked oxidase C-terminal domain-containing protein [KO:K00104] [EC:1.1.99.14]
SR858_02680  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
SR858_02685  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
SR858_03910  catalase [KO:K03781] [EC:1.11.1.6]
SR858_13830  catalase family peroxidase [KO:K03781] [EC:1.11.1.6]
SR858_14295  catalase [KO:K03781] [EC:1.11.1.6]
SR858_18650  catalase [KO:K03781] [EC:1.11.1.6]
SR858_26670  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
SR858_15545  D-2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
SR858_01670  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
SR858_04845  HAD-IIIA family hydrolase [KO:K01091] [EC:3.1.3.18]
SR858_27290  HAD hydrolase-like protein [KO:K01091] [EC:3.1.3.18]
SR858_01095  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
SR858_01125  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
SR858_01140  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
SR858_18890  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
SR858_14615  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
SR858_14605  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
SR858_04360  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SR858_18515  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SR858_27010  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SR858_14610  gcvH; glycine cleavage system protein GcvH [KO:K02437]
SR858_06755  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
SR858_16325  TIM barrel protein [KO:K01816] [EC:5.3.1.22]
SR858_00105  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
SR858_12020  glycerate kinase [KO:K00865] [EC:2.7.1.165]
SR858_02825  glycerate kinase [KO:K11529] [EC:2.7.1.165]
SR858_02835  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
SR858_13030  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
SR858_05230  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
SR858_23220  cupin domain-containing protein [KO:K01569] [EC:4.1.1.2]
SR858_17865  fdnG; formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
SR858_17870  fdxH; formate dehydrogenase subunit beta [KO:K00124]
SR858_17875  formate dehydrogenase subunit gamma [KO:K00127]
SR858_26520  kynB; arylformamidase [KO:K07130] [EC:3.5.1.9]
SR858_06850  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
SR858_22980  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
dzo00010  Glycolysis / Gluconeogenesis
dzo00020  Citrate cycle (TCA cycle)
dzo00030  Pentose phosphate pathway
dzo00053  Ascorbate and aldarate metabolism
dzo00071  Fatty acid degradation
dzo00230  Purine metabolism
dzo00250  Alanine, aspartate and glutamate metabolism
dzo00260  Glycine, serine and threonine metabolism
dzo00620  Pyruvate metabolism
dzo00710  Carbon fixation by Calvin cycle
dzo00750  Vitamin B6 metabolism
dzo00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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