KEGG   PATHWAY: dzo00020
Entry
dzo00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Duganella zoogloeoides
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dzo00020  Citrate cycle (TCA cycle)
dzo00020

Module
dzo_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:dzo00020]
dzo_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:dzo00020]
dzo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:dzo00020]
dzo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:dzo00020]
dzo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dzo00020]
dzo_M00982  Methylcitrate cycle [PATH:dzo00020]
Other DBs
GO: 0006099
Organism
Duganella zoogloeoides [GN:dzo]
Gene
SR858_01235  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
SR858_01240  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
SR858_04350  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
SR858_04355  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
SR858_04360  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SR858_08235  [KO:K00031] [EC:1.1.1.42]
SR858_13895  acnA; aconitate hydratase AcnA [KO:K27802]
SR858_16485  [KO:K01682] [EC:4.2.1.3 4.2.1.99]
SR858_18515  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SR858_18525  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
SR858_18530  [KO:K00164] [EC:1.2.4.2]
SR858_18565  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
SR858_18575  [KO:K00240] [EC:1.3.5.1]
SR858_18580  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SR858_18585  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
SR858_18590  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
SR858_18600  [KO:K00024] [EC:1.1.1.37]
SR858_18615  acnA; aconitate hydratase AcnA [KO:K27802]
SR858_18635  [KO:K18118] [EC:2.8.3.18]
SR858_19445  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
SR858_19500  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SR858_20245  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
SR858_20805  [KO:K01676] [EC:4.2.1.2]
SR858_22595  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
SR858_27010  [KO:K00382] [EC:1.8.1.4]
SR858_27285  [KO:K01596] [EC:4.1.1.32]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dzo00010  Glycolysis / Gluconeogenesis
dzo00053  Ascorbate and aldarate metabolism
dzo00061  Fatty acid biosynthesis
dzo00071  Fatty acid degradation
dzo00190  Oxidative phosphorylation
dzo00220  Arginine biosynthesis
dzo00250  Alanine, aspartate and glutamate metabolism
dzo00280  Valine, leucine and isoleucine degradation
dzo00350  Tyrosine metabolism
dzo00470  D-Amino acid metabolism
dzo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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