Entry
Name
ABC transporters - Pectobacterium atrosepticum SCRI1043
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
BRITE hierarchy
Pathway map
Ortholog table
Other DBs
Organism
Pectobacterium atrosepticum SCRI1043 [GN:
eca ]
Gene
ECA0884 cysT; sulphate transport system permease protein [KO:K02046 ]
ECA3298 cysU; sulfate ABC transporter permease protein [KO:K02046 ]
ECA0885 cysW; sulfate transport system permease protein [KO:K02047 ]
ECA1528 tauA; putative taurine-binding periplasmic protein [KO:K15551 ]
ECA1529 tauC; putative taurine transport system permease protein [KO:K15552 ]
ECA4410 ssuA; putative aliphatic sulfonates binding protein [KO:K15553 ]
ECA1558 atsR; putative sulfate ester transporter, periplasmic binding component [KO:K15553 ]
ECA4412 ssuC; putative aliphatic sulfonates transport permease protein [KO:K15554 ]
ECA1557 atsB; putative sulfate ester transporter, permease component [KO:K15554 ]
ECA4297 astB; sulfate ester ABC transporter permease protein [KO:K15554 ]
ECA1394 modB; molybdenum transport system permease protein [KO:K02018 ]
ECA1390 modF; putative molybdenum transport ATP-binding protein [KO:K05776 ]
ECA1493 afuB; ferric ABC transporter permease protein [KO:K02011 ]
ECA3138 sfuB; iron(III)-transport system permease protein [KO:K02011 ]
ECA3844 tbpA; thiamine-binding periplasmic protein precursor [KO:K02064 ]
ECA3845 thiP; thiamine transport system permease protein [KO:K02063 ]
ECA2453 potD; spermidine/putrescine-binding periplasmic protein [KO:K11069 ]
ECA2452 potC; spermidine/putrescine transport system permease protein [KO:K11070 ]
ECA2451 potB; spermidine/putrescine transport system permease protein [KO:K11071 ]
ECA2674 potI; putrescine transport system permease protein [KO:K11074 ]
ECA2675 potH; putrescine transport system permease protein [KO:K11075 ]
ECA3504 proX; glycine betaine-binding periplasmic protein precursor [KO:K02002 ]
ECA3503 proW; glycine betaine/L-proline transport system permease protein [KO:K02001 ]
ECA3748 ABC transporter, ATP-binding protein [KO:K10111 ] [EC:7.5.2.-]
ECA3174 malK; maltose/maltodextrin transport ATP-binding protein [KO:K10111 ] [EC:7.5.2.-]
ECA3176 malF; maltose transport system permease protein [KO:K15771 ]
ECA3177 malG; maltose/maltodextrin transport permease protein [KO:K15772 ]
ECA0848 putative sugar ABC transporter, periplasmic binding protein [KO:K10188 ]
ECA0849 putative sugar ABC transporter, permease protein [KO:K10189 ]
ECA0850 putative sugar ABC transporter, permease protein [KO:K10190 ]
ECA0851 putative sugar ABC transporter ATP-binding protein [KO:K10191 ]
ECA2406 togB; periplasmic pectic oligomers binding protein [KO:K10192 ]
ECA2403 togM; binding-protein-dependent transport system, inner membrane component [KO:K10193 ]
ECA2404 togN; binding-protein-dependent transport system, inner membrane component [KO:K10194 ]
ECA0012 rbsC; ribose transport permease system protein [KO:K10440 ]
ECA2273 araF; L-arabinose-binding periplasmic protein [KO:K10537 ]
ECA2271 araH; L-arabinose transport system permease protein [KO:K10538 ]
ECA1949 putative sugar ABC transporter, permease protein [KO:K17203 ]
ECA1948 putative sugar ABC transporter, ATP-binding protein [KO:K17204 ]
ECA1459 putative sugar ABC transporter, periplasmic protein [KO:K17208 ]
ECA1461 putative sugar ABC transporter, permease protein [KO:K17209 ]
ECA1460 putative sugar ABC transporter, ATP-binding protein [KO:K17210 ]
ECA2429 glycerol-3-phosphate-binding periplasmic protein precursor [KO:K05813 ]
ECA4322 ugpB; glycerol-3-phosphate-binding periplasmic protein [KO:K05813 ]
ECA0752 probable sugar ABC transporter, periplasmic binding protein [KO:K05813 ]
ECA4321 ugpA; sn-glycerol-3-phosphate transport system permease protein [KO:K05814 ]
ECA0748 putative binding-protein-dependent transport system protein [KO:K05814 ]
ECA4320 ugpE; sn-glycerol-3-phosphate transport system permease protein [KO:K05815 ]
ECA0749 putative binding-protein-dependent transport system protein [KO:K05815 ]
ECA4476 pstC; phosphate transport system permease protein [KO:K02037 ]
ECA3163 pstC; phosphate ABC transporter permease protein [KO:K02037 ]
ECA4475 pstA; phosphate transport system permease protein [KO:K02038 ]
ECA3162 pstA; phosphate ABC transporter permease protein [KO:K02038 ]
ECA0828 putative amino acid-binding periplasmic protein [KO:K10013 ]
ECA3048 hisM; histidine ABC transporter permease protein [KO:K10015 ]
ECA3049 hisQ; histidine ABC transporter permease protein [KO:K10016 ]
ECA2769 glnP; glutamine transport system permease protein [KO:K10037 ]
ECA2670 artM; arginine transport system permease protein [KO:K09998 ]
ECA2669 artQ; arginine transport system permease protein [KO:K09999 ]
ECA1314 gltI; glutamate/aspartate periplasmic binding protein [KO:K10001 ]
ECA1312 gltK; glutamate/aspartate transport system permease protein [KO:K10002 ]
ECA1313 gltJ; glutamate/aspartate transport system permease protein [KO:K10003 ]
ECA4083 occM; octopine transport system permease protein [KO:K10019 ]
ECA4082 occQ; octopine transport system permease protein [KO:K10020 ]
ECA0245 aapJ; general L-amino ABC transporter binding protein [KO:K09969 ]
ECA0244 aapQ; L-amino acid ABC transporter permease protein [KO:K09970 ]
ECA0243 aapM; L-amino acid ABC transporter permease protein [KO:K09971 ]
ECA0246 putative amino-acid transport system permease protein [KO:K10009 ]
ECA4195 putative amino-acid ABC transporter binding protein [KO:K16961 ]
ECA4194 probable amino-acid ABC transporter permease protein [KO:K16962 ]
ECA4193 putative amino-acid ABC transporter ATP-binding protein [KO:K16963 ]
ECA4340 livH; high-affinity branched-chain amino acid transport system permease protein [KO:K01997 ]
ECA4339 livM; high-affinity branched-chain amino acid transport system permease protein [KO:K01998 ]
ECA4338 livG; high-affinity branched-chain amino acid transport ATP-binding protein [KO:K01995 ]
ECA4337 livF; high-affinity branched-chain amino acid transport ATP-binding protein [KO:K01996 ]
ECA3525 metI; D-methionine transport system permease protein [KO:K02072 ]
ECA3524 metN; D-methionine transport ATP-binding protein [KO:K02071 ]
ECA2144 putative substrate-binding periplasmic transport protein [KO:K11959 ]
ECA2145 putative branched-chain amino acid transport system, permease component [KO:K11960 ]
ECA2146 putative branched-chain amino acid transport system, permease component [KO:K11961 ]
ECA2324 oppA1; periplasmic oligopeptide-binding protein [KO:K15580 ]
ECA1992 mppA; periplasmic murein peptide-binding protein [KO:K15580 ]
ECA2325 oppA2; periplasmic oligopeptide-binding protein [KO:K15580 ]
ECA1942 putative periplasmic oligopeptide-binding protein [KO:K15580 ]
ECA2323 oppB; oligopeptide transport system permease protein [KO:K15581 ]
ECA2322 oppC; oligopeptide transport system permease protein [KO:K15582 ]
ECA2321 oppD; oligopeptide transport ATP-binding protein [KO:K15583 ]
ECA2320 oppF; oligopeptide transport ATP-binding protein [KO:K10823 ]
ECA4394 dppA; periplasmic dipeptide transport protein [KO:K12368 ]
ECA4393 dppB; dipeptide transport system permease protein [KO:K12369 ]
ECA4392 dppC; dipeptide transport system permease protein [KO:K12370 ]
ECA4391 dppD; dipeptide transport ATP-binding protein [KO:K12371 ]
ECA4390 dppF; dipeptide transport ATP-binding protein [KO:K12372 ]
ECA1976 sapB; peptide transport system permease protein [KO:K19227 ]
ECA1975 sapC; peptide transport system permease protein [KO:K19228 ]
ECA1974 sapD; peptide transport system ATP-binding protein [KO:K19229 ]
ECA1973 sapF; peptide transport system ATP-binding protein [KO:K19230 ]
ECA2834 putative ABC transporter periplasmic binding protein [KO:K13889 ]
ECA2736 putative ABC transporter, periplasmic binding protein [KO:K13893 ]
ECA2737 putative binding-protein-dependent transporter [KO:K13894 ]
ECA2739 putative ABC-transporter, ATP-binding protein [KO:K13896 ]
ECA1076 fecB; iron(III) dicitrate-binding periplasmic protein [KO:K23181 ]
ECA1074 fecD; iron(III) dicitrate transport system permease protein [KO:K23182 ]
ECA1075 fecC; iron(III) dicitrate transport system permease protein [KO:K23183 ]
ECA3311 fhuD; ferrichrome-binding periplasmic protein [KO:K23227 ]
ECA3310 fhuB; ferrichrome transport system permease protein [KO:K23228 ]
ECA2484 znuA; high-affinity zinc uptake system protein [KO:K09815 ]
ECA2486 znuB; high-affinity zinc uptake system membrane protein [KO:K09816 ]
ECA2392 yfeA; periplasmic chelated iron-binding protein [KO:K11604 ]
ECA2394 yfeC; chelated iron transport system membrane protein [KO:K11605 ]
ECA2395 yfeD; chelated iron transport system membrane protein [KO:K11606 ]
ECA2393 yfeB; chelated iron transport system membrane protein [KO:K11607 ]
ECA1823 lolC; lipoprotein releasing system transmembrane protein [KO:K09808 ]
ECA1825 lolE; lipoprotein releasing system transmembrane protein [KO:K09808 ]
ECA1824 lolD; lipoprotein releasing system ATP-binding protein [KO:K09810 ] [EC:7.6.2.-]
ECA1158 mdlA; ATP-binding component of ABC transporter [KO:K18889 ]
ECA1159 mdlB; ATP-binding component of ABC transporter [KO:K18890 ]
ECA1097 putative type I secretion protein, ATP-binding protein [KO:K12541 ]
ECA0887 macB; macrolide-specific ABC-type efflux carrier [KO:K05685 ] [EC:7.6.2.-]
Compound
C00093 sn-Glycerol 3-phosphate
C01153 Orthophosphoric monoester
C01181 4-Trimethylammoniobutanoate
C01279 4-Amino-5-hydroxymethyl-2-methylpyrimidine
C03557 2-Aminoethylphosphonate
C03611 Galactose oligosaccharide
C03619 Methyl beta-D-galactoside
C04114 (E)-4-(Trimethylammonio)but-2-enoate
C06705 Capsular polysaccharide
C19872 N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570 alpha-1,5-L-Arabinobiose
C20571 alpha-1,5-L-Arabinotriose
C20572 alpha-1,5-L-Arabinotetraose
Reference
Authors
Tomii K, Kanehisa M.
Title
A comparative analysis of ABC transporters in complete microbial genomes.
Journal
Reference
Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
Journal
Reference
Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
Journal
Reference
Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
Journal
Reference
Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
Journal
Reference
Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
Journal
Reference
Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
Journal
Reference
Authors
Richard-Fogal CL, Frawley ER, Kranz RG
Title
Topology and function of CcmD in cytochrome c maturation.
Journal
Reference
Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
Journal
Reference
Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
Journal
Reference
Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
Journal
Reference
Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
Journal
KO pathway
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