KEGG   PATHWAY: echi00030
Entry
echi00030                   Pathway                                
Name
Pentose phosphate pathway - Echinicola soli
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
echi00030  Pentose phosphate pathway
echi00030

Module
echi_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:echi00030]
echi_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:echi00030]
echi_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:echi00030]
echi_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:echi00030]
echi_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:echi00030]
Other DBs
GO: 0006098
Organism
Echinicola soli [GN:echi]
Gene
FKX85_18930  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
FKX85_13545  glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
FKX85_13550  pgl; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
FKX85_17555  lactonase family protein [KO:K07404] [EC:3.1.1.31]
FKX85_02020  gndA; NADP-dependent phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
FKX85_13540  gndA; NADP-dependent phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
FKX85_19475  gnd; decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
FKX85_15680  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
FKX85_03955  transketolase [KO:K00615] [EC:2.2.1.1]
FKX85_03960  transketolase family protein [KO:K00615] [EC:2.2.1.1]
FKX85_13835  transketolase family protein [KO:K00615] [EC:2.2.1.1]
FKX85_13840  transketolase [KO:K00615] [EC:2.2.1.1]
FKX85_11950  fsa; fructose-6-phosphate aldolase [KO:K00616] [EC:2.2.1.2]
FKX85_04460  rpiB; ribose 5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
FKX85_13535  RpiB/LacA/LacB family sugar-phosphate isomerase [KO:K01808] [EC:5.3.1.6]
FKX85_07575  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
FKX85_20650  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
FKX85_14095  phospho-sugar mutase [KO:K01835] [EC:5.4.2.2]
FKX85_20965  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
FKX85_17750  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
FKX85_15225  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
FKX85_01585  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
FKX85_17735  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
FKX85_15220  sugar kinase [KO:K00874] [EC:2.7.1.45]
FKX85_13520  fbaA; class II fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
FKX85_08905  class 1 fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
FKX85_11245  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
FKX85_10980  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
echi00010  Glycolysis / Gluconeogenesis
echi00040  Pentose and glucuronate interconversions
echi00052  Galactose metabolism
echi00230  Purine metabolism
echi00240  Pyrimidine metabolism
echi00340  Histidine metabolism
echi00630  Glyoxylate and dicarboxylate metabolism
echi00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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