KEGG   PATHWAY: ecli00030
Entry
ecli00030                   Pathway                                
Name
Pentose phosphate pathway - Enterobacter cloacae ECNIH5
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ecli00030  Pentose phosphate pathway
ecli00030

Module
ecli_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:ecli00030]
ecli_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:ecli00030]
ecli_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:ecli00030]
ecli_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:ecli00030]
ecli_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:ecli00030]
ecli_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:ecli00030]
ecli_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:ecli00030]
Other DBs
GO: 0006098
Organism
Enterobacter cloacae ECNIH5 [GN:ecli]
Gene
ECNIH5_01605  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
ECNIH5_12920  glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
ECNIH5_06580  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
ECNIH5_02600  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
ECNIH5_13950  6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
ECNIH5_20250  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
ECNIH5_17855  transketolase [KO:K00615] [EC:2.2.1.1]
ECNIH5_15475  transketolase [KO:K00615] [EC:2.2.1.1]
ECNIH5_15005  transketolase [KO:K00615] [EC:2.2.1.1]
ECNIH5_15010  carbohydrate degradation protein [KO:K00615] [EC:2.2.1.1]
ECNIH5_15470  transaldolase [KO:K00616] [EC:2.2.1.2]
ECNIH5_03360  transaldolase [KO:K00616] [EC:2.2.1.2]
ECNIH5_17785  ribose 5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
ECNIH5_03230  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
ECNIH5_00020  ribokinase [KO:K00852] [EC:2.7.1.15]
ECNIH5_03240  phosphopentomutase [KO:K01839] [EC:5.4.2.7]
ECNIH5_06275  phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
ECNIH5_01930  ribose-phosphate pyrophosphokinase [KO:K05774] [EC:2.7.4.23]
ECNIH5_12120  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
ECNIH5_12915  phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
ECNIH5_12910  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
ECNIH5_11800  glucose dehydrogenase [KO:K00117] [EC:1.1.5.2]
ECNIH5_03850  glucose dehydrogenase [KO:K00117] [EC:1.1.5.2]
ECNIH5_01270  bifunctional glyoxylate/hydroxypyruvate reductase B [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
ECNIH5_20490  gntK; gluconate kinase [KO:K00851] [EC:2.7.1.12]
ECNIH5_20910  ketodeoxygluconokinase [KO:K00874] [EC:2.7.1.45]
ECNIH5_01280  2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
ECNIH5_14215  fructose-bisphosphate aldolase [KO:K11645] [EC:4.1.2.13]
ECNIH5_17810  fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
ECNIH5_01885  hypothetical protein [KO:K01624] [EC:4.1.2.13]
ECNIH5_02535  fructose 1,6-bisphosphatase [KO:K03841] [EC:3.1.3.11]
ECNIH5_21500  fructose 1,6-bisphosphatase [KO:K02446] [EC:3.1.3.11]
ECNIH5_17835  fructose 1,6-bisphosphatase [KO:K02446] [EC:3.1.3.11]
ECNIH5_21540  6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
ECNIH5_08820  6-phosphofructokinase [KO:K16370] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
ecli00010  Glycolysis / Gluconeogenesis
ecli00040  Pentose and glucuronate interconversions
ecli00052  Galactose metabolism
ecli00230  Purine metabolism
ecli00240  Pyrimidine metabolism
ecli00340  Histidine metabolism
ecli00630  Glyoxylate and dicarboxylate metabolism
ecli00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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