KEGG   PATHWAY: enu00030
Entry
enu00030                    Pathway                                
Name
Pentose phosphate pathway - Sinorhizobium numidicum
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
enu00030  Pentose phosphate pathway
enu00030

Module
enu_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:enu00030]
enu_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:enu00030]
enu_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:enu00030]
enu_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:enu00030]
enu_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:enu00030]
enu_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:enu00030]
Other DBs
GO: 0006098
Organism
Sinorhizobium numidicum [GN:enu]
Gene
PYH37_002697  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
PYH37_002918  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
PYH37_002917  pgl; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
PYH37_004323  gndA; NADP-dependent phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
PYH37_004147  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
PYH37_001429  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
PYH37_003895  transketolase family protein [KO:K00615] [EC:2.2.1.1]
PYH37_003896  transketolase [KO:K00615] [EC:2.2.1.1]
PYH37_005318  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
PYH37_001424  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
PYH37_001549  transketolase [KO:K00615] [EC:2.2.1.1]
PYH37_005589  fsa; fructose-6-phosphate aldolase [KO:K00616] [EC:2.2.1.2]
PYH37_004238  rpiA; ribose-5-phosphate isomerase RpiA [KO:K01807] [EC:5.3.1.6]
PYH37_001174  phosphoketolase family protein [KO:K01621] [EC:4.1.2.9 4.1.2.22]
PYH37_002322  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
PYH37_000925  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
PYH37_002626  ribokinase [KO:K00852] [EC:2.7.1.15]
PYH37_000371  ribokinase [KO:K00852] [EC:2.7.1.15]
PYH37_000922  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
PYH37_001910  ribokinase [KO:K00852] [EC:2.7.1.15]
PYH37_002327  phosphopentomutase [KO:K01839] [EC:5.4.2.7]
PYH37_005397  alpha-D-glucose phosphate-specific phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
PYH37_000705  phnN; phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN [KO:K05774] [EC:2.7.4.23]
PYH37_004821  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
PYH37_002916  edd; phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
PYH37_005434  2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
PYH37_003211  glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase [KO:K00117] [EC:1.1.5.2]
PYH37_001257  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
PYH37_000295  gluconokinase [KO:K00851] [EC:2.7.1.12]
PYH37_001093  gluconokinase [KO:K00851] [EC:2.7.1.12]
PYH37_006280  gluconokinase [KO:K00851] [EC:2.7.1.12]
PYH37_004885  sugar kinase [KO:K00874] [EC:2.7.1.45]
PYH37_005764  glycerate kinase [KO:K11529] [EC:2.7.1.165]
PYH37_002061  glycerate kinase [KO:K11529] [EC:2.7.1.165]
PYH37_005322  fructose-bisphosphate aldolase class I [KO:K01623] [EC:4.1.2.13]
PYH37_000724  fba; fructose-bisphosphate aldolase class II [KO:K01624] [EC:4.1.2.13]
PYH37_001425  fba; fructose-bisphosphate aldolase class II [KO:K01624] [EC:4.1.2.13]
PYH37_001422  class 1 fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
PYH37_004660  pyrophosphate--fructose-6-phosphate 1-phosphotransferase [KO:K00895] [EC:2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
enu00010  Glycolysis / Gluconeogenesis
enu00040  Pentose and glucuronate interconversions
enu00052  Galactose metabolism
enu00230  Purine metabolism
enu00240  Pyrimidine metabolism
enu00340  Histidine metabolism
enu00630  Glyoxylate and dicarboxylate metabolism
enu00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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