KEGG   PATHWAY: epu03430
Entry
epu03430                    Pathway                                
Name
Mismatch repair - Enterobacter pseudoroggenkampii
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
epu03430  Mismatch repair
epu03430

Other DBs
GO: 0006298
Organism
Enterobacter pseudoroggenkampii [GN:epu]
Gene
QVH39_18445  mutS; DNA mismatch repair protein MutS [KO:K03555]
QVH39_02010  mutL; DNA mismatch repair endonuclease MutL [KO:K03572]
QVH39_18820  mutH; DNA mismatch repair endonuclease MutH [KO:K03573]
QVH39_22270  uvrD; DNA helicase II [KO:K03657] [EC:5.6.2.4]
QVH39_15080  sbcB; exodeoxyribonuclease I [KO:K01141] [EC:3.1.11.1]
QVH39_17215  xseA; exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
QVH39_04790  xseB; exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
QVH39_14270  exoX; exodeoxyribonuclease X [KO:K10857] [EC:3.1.11.-]
QVH39_19060  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
QVH39_01555  ssb1; single-stranded DNA-binding protein SSB1 [KO:K03111]
QVH39_04050  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
QVH39_00010  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
QVH39_05100  dnaX; DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
QVH39_06060  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
QVH39_08745  holB; DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
QVH39_04210  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
QVH39_14260  DNA polymerase III subunit theta [KO:K02345] [EC:2.7.7.7]
QVH39_20710  holC; DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
QVH39_03045  DNA polymerase III subunit psi [KO:K02344] [EC:2.7.7.7]
QVH39_16690  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
QVH39_00445  ligB; NAD-dependent DNA ligase LigB [KO:K01972] [EC:6.5.1.2]
QVH39_21475  dam; adenine-specific DNA-methyltransferase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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