KEGG   PATHWAY: etc00030
Entry
etc00030                    Pathway                                
Name
Pentose phosphate pathway - Edwardsiella piscicida C07-087
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
etc00030  Pentose phosphate pathway
etc00030

Module
etc_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:etc00030]
etc_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:etc00030]
etc_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:etc00030]
etc_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:etc00030]
etc_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:etc00030]
etc_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:etc00030]
etc_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:etc00030]
Other DBs
GO: 0006098
Organism
Edwardsiella piscicida C07-087 [GN:etc]
Gene
ETAC_00855  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
ETAC_06810  glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
ETAC_06815  6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
ETAC_05770  6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
ETAC_15535  Ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
ETAC_14240  transketolase [KO:K00615] [EC:2.2.1.1]
ETAC_02760  transaldolase B [KO:K00616] [EC:2.2.1.2]
ETAC_14200  ribose 5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
ETAC_05350  ribose 5-phosphate isomerase B, putative [KO:K01808] [EC:5.3.1.6]
ETAC_02355  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
ETAC_09035  Ribokinase [KO:K00852] [EC:2.7.1.15]
ETAC_16880  Ribokinase [KO:K00852] [EC:2.7.1.15]
ETAC_02365  phosphopentomutase [KO:K01839] [EC:5.4.2.7]
ETAC_12525  phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
ETAC_06575  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
ETAC_06820  phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
ETAC_06825  keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
ETAC_00525  gntK; gluconate kinase 1 [KO:K00851] [EC:2.7.1.12]
ETAC_16110  2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
ETAC_14225  fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
ETAC_01685  fructose-1,6-bisphosphatase [KO:K03841] [EC:3.1.3.11]
ETAC_16335  glpX; fructose 1,6-bisphosphatase II [KO:K02446] [EC:3.1.3.11]
ETAC_16370  6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
ETAC_08365  6-phosphofructokinase 2 [KO:K16370] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
etc00010  Glycolysis / Gluconeogenesis
etc00040  Pentose and glucuronate interconversions
etc00052  Galactose metabolism
etc00230  Purine metabolism
etc00240  Pyrimidine metabolism
etc00340  Histidine metabolism
etc00630  Glyoxylate and dicarboxylate metabolism
etc00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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