KEGG   PATHWAY: etm00020
Entry
etm00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Emergencia timonensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
etm00020  Citrate cycle (TCA cycle)
etm00020

Module
etm_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:etm00020]
etm_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:etm00020]
etm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:etm00020]
Other DBs
GO: 0006099
Organism
Emergencia timonensis [GN:etm]
Gene
CE91St48_30720  HMGL-related enzyme [KO:K05942] [EC:2.3.3.3]
CE91St48_30700  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CE91St48_30690  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
CE91St48_33920  acoL; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CE91St48_27720  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CE91St48_06360  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CE91St48_01500  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CE91St48_06370  MFS transporter [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CE91St48_01490  korB; 2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CE91St48_01540  MFS transporter [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CE91St48_06380  2-oxoacid:ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
CE91St48_01480  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
CE91St48_01550  2-oxoacid:ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
CE91St48_06350  4Fe-4S ferredoxin [KO:K00176] [EC:1.2.7.3]
CE91St48_01510  hypothetical protein [KO:K00176] [EC:1.2.7.3]
CE91St48_01520  4Fe-4S ferredoxin [KO:K00176] [EC:1.2.7.3]
CE91St48_23130  cat1; acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
CE91St48_12910  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
CE91St48_28720  pykA; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CE91St48_39510  pckG; phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
CE91St48_31610  2-ketoisovalerate ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
CE91St48_31600  thiamine pyrophosphate domain-containing TPP-binding protein [KO:K00170] [EC:1.2.7.1]
CE91St48_31630  pyruvate synthase [KO:K00172] [EC:1.2.7.1]
CE91St48_31620  pyruvate synthase subunit PorD [KO:K00171] [EC:1.2.7.1]
CE91St48_34030  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
CE91St48_34680  nifJ2_1; pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
CE91St48_36820  nifJ2_2; pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
etm00010  Glycolysis / Gluconeogenesis
etm00053  Ascorbate and aldarate metabolism
etm00061  Fatty acid biosynthesis
etm00071  Fatty acid degradation
etm00190  Oxidative phosphorylation
etm00220  Arginine biosynthesis
etm00250  Alanine, aspartate and glutamate metabolism
etm00280  Valine, leucine and isoleucine degradation
etm00350  Tyrosine metabolism
etm00470  D-Amino acid metabolism
etm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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