KEGG   PATHWAY: fbi00030
Entry
fbi00030                    Pathway                                
Name
Pentose phosphate pathway - Flavobacterium bizetiae
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fbi00030  Pentose phosphate pathway
fbi00030

Module
fbi_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:fbi00030]
fbi_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:fbi00030]
fbi_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:fbi00030]
fbi_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:fbi00030]
fbi_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:fbi00030]
Other DBs
GO: 0006098
Organism
Flavobacterium bizetiae [GN:fbi]
Gene
L0669_03725  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
L0669_10830  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
L0669_10825  pgl; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
L0669_12535  lactonase family protein [KO:K07404] [EC:3.1.1.31]
L0669_10835  gndA; NADP-dependent phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
L0669_07395  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
L0669_00245  transketolase [KO:K00615] [EC:2.2.1.1]
L0669_00250  transketolase family protein [KO:K00615] [EC:2.2.1.1]
L0669_05715  transketolase [KO:K00615] [EC:2.2.1.1]
L0669_05720  fsa; fructose-6-phosphate aldolase [KO:K00616] [EC:2.2.1.2]
L0669_10560  fsa; fructose-6-phosphate aldolase [KO:K00616] [EC:2.2.1.2]
L0669_20355  fsa; fructose-6-phosphate aldolase [KO:K00616] [EC:2.2.1.2]
L0669_05200  rpiB; ribose 5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
L0669_08590  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
L0669_05805  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
L0669_03835  prs; ribose-phosphate diphosphokinase [KO:K00948] [EC:2.7.6.1]
L0669_19145  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
L0669_03360  aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
L0669_19685  NADP-dependent glyceraldehyde-3-phosphate dehydrogenase [KO:K00131] [EC:1.2.1.9]
L0669_22595  NADP-dependent glyceraldehyde-3-phosphate dehydrogenase [KO:K00131] [EC:1.2.1.9]
L0669_19150  sugar kinase [KO:K00874] [EC:2.7.1.45]
L0669_03355  sugar kinase [KO:K00874] [EC:2.7.1.45]
L0669_04875  fructose bisphosphate aldolase [KO:K01623] [EC:4.1.2.13]
L0669_07540  fbaA; class II fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
L0669_02785  fbp; class 1 fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
L0669_20490  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
fbi00010  Glycolysis / Gluconeogenesis
fbi00040  Pentose and glucuronate interconversions
fbi00052  Galactose metabolism
fbi00230  Purine metabolism
fbi00240  Pyrimidine metabolism
fbi00340  Histidine metabolism
fbi00630  Glyoxylate and dicarboxylate metabolism
fbi00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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