KEGG   PATHWAY: fca03008
Entry
fca03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Felis catus (domestic cat)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
fca03008  Ribosome biogenesis in eukaryotes
fca03008

Organism
Felis catus (domestic cat) [GN:fca]
Gene
101087664  CSNK2B; casein kinase II subunit beta [KO:K03115]
101084186  CSNK2A1; casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
101093065  CSNK2A2; casein kinase II subunit alpha' isoform X1 [KO:K03097] [EC:2.7.11.1]
101080490  NOL6; nucleolar protein 6 isoform X1 [KO:K14544]
101085055  RRP7A; ribosomal RNA-processing protein 7 homolog A [KO:K14545]
101092177  WDR43; WD repeat-containing protein 43 [KO:K14546]
101096526  UTP4; U3 small nucleolar RNA-associated protein 4 homolog [KO:K14548]
101093914  UTP15; U3 small nucleolar RNA-associated protein 15 homolog [KO:K14549]
101085241  HEATR1; HEAT repeat-containing protein 1 [KO:K14550]
101100321  WDR75; WD repeat-containing protein 75 isoform X1 [KO:K14552]
102901700  UTP18; U3 small nucleolar RNA-associated protein 18 homolog isoform X1 [KO:K14553]
101086116  WDR36; WD repeat-containing protein 36 isoform X1 [KO:K14554]
101084250  TBL3; transducin beta-like protein 3 [KO:K14555]
101090282  WDR3; WD repeat-containing protein 3 isoform X1 [KO:K14556]
101089555  UTP6; U3 small nucleolar RNA-associated protein 6 homolog isoform X1 [KO:K14557]
101092042  PWP2; periodic tryptophan protein 2 homolog isoform X1 [KO:K14558]
101085722  MPHOSPH10; U3 small nucleolar ribonucleoprotein protein MPP10 isoform X1 [KO:K14559]
101097730  IMP3; U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
101080603  IMP4; U3 small nucleolar ribonucleoprotein protein IMP4 [KO:K14561]
101083909  TCOF1; LOW QUALITY PROTEIN: treacle protein [KO:K14562]
101094807  FBL; rRNA 2'-O-methyltransferase fibrillarin [KO:K14563] [EC:2.1.1.-]
101085349  FBLL1; rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1 [KO:K14563] [EC:2.1.1.-]
101099455  NOP56; nucleolar protein 56 isoform X1 [KO:K14564]
101096089  NOP58; nucleolar protein 58 isoform X1 [KO:K14565]
101081647  SNU13; NHP2-like protein 1 isoform X1 [KO:K12845]
101096046  DKC1; H/ACA ribonucleoprotein complex subunit DKC1 [KO:K11131] [EC:5.4.99.-]
101088136  NHP2; H/ACA ribonucleoprotein complex subunit 2 [KO:K11129]
101083587  GAR1; H/ACA ribonucleoprotein complex subunit 1 [KO:K11128]
101098467  NOP10; H/ACA ribonucleoprotein complex subunit 3 [KO:K11130]
101095023  FCF1; rRNA-processing protein FCF1 homolog isoform X1 [KO:K14566]
101080621  UTP14A; U3 small nucleolar RNA-associated protein 14 homolog A isoform X1 [KO:K14567]
101100622  DROSHA; ribonuclease 3 isoform X4 [KO:K03685] [EC:3.1.26.3]
101088173  EMG1; ribosomal RNA small subunit methyltransferase NEP1 isoform X1 [KO:K14568] [EC:2.1.1.260]
101101341  BMS1; ribosome biogenesis protein BMS1 homolog isoform X1 [KO:K14569]
101093393  NAT10; RNA cytidine acetyltransferase isoform X1 [KO:K14521] [EC:2.3.1.-]
101089219  RCL1; RNA 3'-terminal phosphate cyclase-like protein isoform X1 [KO:K11108]
101094080  POP1; ribonucleases P/MRP protein subunit POP1 isoform X1 [KO:K01164] [EC:3.1.26.5]
101099727  RPP38; ribonuclease P protein subunit p38 [KO:K14523] [EC:3.1.26.5]
101094066  POP4; ribonuclease P protein subunit p29 isoform X1 [KO:K03538] [EC:3.1.26.5]
101097179  POP5; ribonuclease P/MRP protein subunit POP5 [KO:K03537] [EC:3.1.26.5]
101084881  RPP25; ribonuclease P protein subunit p25 [KO:K14525] [EC:3.1.26.5]
101084398  RPP25L; ribonuclease P protein subunit p25-like protein [KO:K14525] [EC:3.1.26.5]
101093980  POP7; ribonuclease P protein subunit p20 [KO:K14527] [EC:3.1.26.5]
101083713  RPP30; ribonuclease P protein subunit p30 isoform X3 [KO:K03539] [EC:3.1.26.5]
101082058  RPP40; ribonuclease P protein subunit p40 isoform X1 [KO:K14530] [EC:3.1.26.5]
101082030  REXO5; RNA exonuclease 5 isoform X1 [KO:K14570] [EC:3.1.-.-]
105261118  REXO1; LOW QUALITY PROTEIN: RNA exonuclease 1 homolog [KO:K14570] [EC:3.1.-.-]
101093554  RNA exonuclease 1 homolog isoform X1 [KO:K14570] [EC:3.1.-.-]
101083700  REXO2; oligoribonuclease, mitochondrial [KO:K13288] [EC:3.1.-.-]
101097088  XRN1; 5'-3' exoribonuclease 1 isoform X1 [KO:K12618] [EC:3.1.13.-]
101084699  XRN2; 5'-3' exoribonuclease 2 isoform X1 [KO:K12619] [EC:3.1.13.-]
101094514  GTPBP4; GTP-binding protein 4 [KO:K06943]
101090786  GNL2; nucleolar GTP-binding protein 2 [KO:K14537]
101092921  GNL3; guanine nucleotide-binding protein-like 3 isoform X1 [KO:K14538]
101093501  GNL3L; guanine nucleotide-binding protein-like 3-like protein isoform X1 [KO:K14538]
101101532  NVL; nuclear valosin-containing protein-like isoform X1 [KO:K14571]
101095173  MDN1; midasin [KO:K14572]
101100630  RBM28; RNA-binding protein 28 isoform X2 [KO:K14573]
101098104  NOB1; RNA-binding protein NOB1 [KO:K11883]
101080666  RAN; GTP-binding nuclear protein Ran [KO:K07936]
101084532  XPO1; exportin-1 isoform X1 [KO:K14290]
101082175  NMD3; 60S ribosomal export protein NMD3 isoform X2 [KO:K07562]
101092292  NXF1; nuclear RNA export factor 1 isoform X1 [KO:K14284]
101092919  nuclear RNA export factor 2-like [KO:K14284]
101093921  nuclear RNA export factor 2 isoform X1 [KO:K14284]
105259665  nuclear RNA export factor 3-like isoform X1 [KO:K14284]
101085619  NXT1; NTF2-related export protein 1 [KO:K14285]
101090496  NXT2; NTF2-related export protein 2 isoform X1 [KO:K14285]
101082644  EIF6; eukaryotic translation initiation factor 6 [KO:K03264]
101100775  SBDS; ribosome maturation protein SBDS [KO:K14574]
101088669  EFL1; elongation factor-like GTPase 1 isoform X3 [KO:K14536] [EC:3.6.5.-]
101086415  LSG1; large subunit GTPase 1 homolog [KO:K14539] [EC:3.6.1.-]
101086718  SPATA5; ATPase family protein 2 homolog isoform X2 [KO:K14575]
109491348  AK6; adenylate kinase isoenzyme 6 isoform X3 [KO:K18532] [EC:2.7.4.3]
101094944  RIOK1; serine/threonine-protein kinase RIO1 isoform X2 [KO:K07178] [EC:2.7.11.1]
101083569  RIOK2; serine/threonine-protein kinase RIO2 isoform X1 [KO:K07179] [EC:2.7.11.1]
111557932  18S ribosomal RNA [KO:K01979]
111559206  18S ribosomal RNA [KO:K01979]
111557881  5.8S ribosomal RNA [KO:K01986]
123382141  28S ribosomal RNA [KO:K01982]
111557141  5S ribosomal RNA [KO:K01981]
111557945  small nucleolar RNA U3 [KO:K14483]
111561621  small nucleolar RNA U3 [KO:K14483]
111558166  small nucleolar RNA U3 [KO:K14483]
111557946  small nucleolar RNA U3 [KO:K14483]
111557947  small nucleolar RNA U3 [KO:K14483]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
fca03010  Ribosome
KO pathway
ko03008   
LinkDB

DBGET integrated database retrieval system