KEGG   PATHWAY: fes00630
Entry
fes00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Ferrimonas lipolytica
Class
Metabolism; Carbohydrate metabolism
Pathway map
fes00630  Glyoxylate and dicarboxylate metabolism
fes00630

Module
fes_M00012  Glyoxylate cycle [PATH:fes00630]
fes_M00621  Glycine cleavage system [PATH:fes00630]
Other DBs
GO: 0046487 0043648
Organism
Ferrimonas lipolytica [GN:fes]
Gene
HER31_09075  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
HER31_05655  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
HER31_09080  malate synthase A [KO:K01638] [EC:2.3.3.9]
HER31_13690  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HER31_03315  citrate synthase [KO:K01647] [EC:2.3.3.1]
HER31_17640  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HER31_10600  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
HER31_11365  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
HER31_12465  catalase [KO:K03781] [EC:1.11.1.6]
HER31_13475  D-2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
HER31_17405  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
HER31_03565  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
HER31_14750  alanine--glyoxylate aminotransferase family protein [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
HER31_16250  glnA; glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
HER31_12120  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
HER31_12610  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
HER31_12620  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
HER31_17625  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HER31_12615  gcvH; glycine cleavage system protein GcvH [KO:K02437]
HER31_03620  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
HER31_03415  glycerate kinase [KO:K00865] [EC:2.7.1.165]
HER31_07025  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
HER31_14515  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
HER31_16225  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
HER31_06000  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
HER31_14510  4Fe-4S dicluster domain-containing protein [KO:K00124]
HER31_16220  4Fe-4S dicluster domain-containing protein [KO:K00124]
HER31_14505  formate dehydrogenase subunit gamma [KO:K00127]
HER31_16215  formate dehydrogenase subunit gamma [KO:K00127]
HER31_11570  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
fes00010  Glycolysis / Gluconeogenesis
fes00020  Citrate cycle (TCA cycle)
fes00030  Pentose phosphate pathway
fes00053  Ascorbate and aldarate metabolism
fes00071  Fatty acid degradation
fes00230  Purine metabolism
fes00250  Alanine, aspartate and glutamate metabolism
fes00260  Glycine, serine and threonine metabolism
fes00620  Pyruvate metabolism
fes00710  Carbon fixation by Calvin cycle
fes00750  Vitamin B6 metabolism
fes00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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